PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

407102

Common Name

SELMODRAFT_407102

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 277aa MW: 30391.2 Da PI: 7.0827

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
407102	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.4	5.1e-15	19	87	2	73
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 W++qe +Liea+ ++r+g + ++W++v+++++++g+ r +qC++kwen+ ++y+ i e+e++++s 407102 19 WSNQEAILLIEAKDA---TSREGMGASAKWQAVADHLESQGVLRDVEQCRSKWENMLGDYRSILEHERRGSS 87 *********9865...5566667799**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-5	10	72	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.246	11	72	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.53E-5	13	72	IPR009057	Homeodomain-like
SMART	SM00717	0.009	15	74	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-11	17	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MATAAAGEYH KKRKRGKNWS NQEAILLIEA KDATSREGMG ASAKWQAVAD HLESQGVLRD 60 VEQCRSKWEN MLGDYRSILE HERRGSSSYF ALTKEQKKDL RLPAKFSQDM FQLLQRTVTR 120 GEADMDALPV VNAAAPFVPG DSFSSEEVPG PGETPSLLQF REVGSSGTGA TATATADPNP 180 PAPHAATPNA AAATATTKRK LRSIAAEPGS GSFELVAKAI SESQEKILAF LQEREERRIE 240 IEERKLSRMD ELFELLSNMA HSWKTLSERM LVNSSR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	17	KKRKRGKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965592.1	0.0	trihelix transcription factor ASR3
TrEMBL	D8R3X3	0.0	D8R3X3_SELML; Uncharacterized protein
STRING	EFJ33012	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7482	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-12	Trihelix family protein

Link Out ? help Back to Top
Phytozome	407102
Entrez Gene	9634644

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]