PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

406998

Common Name

SELMODRAFT_406998

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C3H

Protein Properties

Length: 337aa MW: 37444.7 Da PI: 7.8571

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
406998	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.5e-11	203	228	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y C+++ +tG+C yGd+Ck+ H+ 406998 203 YQPDVCKDYKETGYCGYGDSCKYLHD 228 66789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	3.61E-9	200	233	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.765	202	230	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-7	202	229	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.0E-12	203	233	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-9	203	228	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	2.5E-14	261	320	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	3.81E-13	265	320	No hit	No description
Pfam	PF13920	7.6E-9	277	319	No hit	No description
PROSITE profile	PS50089	10.498	278	316	IPR001841	Zinc finger, RING-type
SMART	SM00184	3.2E-5	278	315	IPR001841	Zinc finger, RING-type
CDD	cd00162	3.78E-8	278	319	No hit	No description
PROSITE pattern	PS00518	0	293	302	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MATEEATAAT NCTFFKKPPK NRNLRKRPQE EEAAGDGAGS GSDEEKSAVV HKPKAPRKGG 60 FTTGVAQRSG ADEAAAAGAG STSKNTFFYE SSKEIQAQDS YATAALETET EFDKDARALR 120 EKVLQAAAKR IKSSSDPFDA TTNKEKGEDK GEKKPAIYKG LNAYTDHRAG FRRENSIASE 180 KAGGAHGPLR AASNVRMSVR FDYQPDVCKD YKETGYCGYG DSCKYLHDRG DYKSGWQLER 240 DWEEAQREKK ERLMRGIKEM VEGKEEDEEE DDELPFACFI CRESFVNPVV TACKHYFCES 300 CALEHYKKNK SCFVCNKPTN GLFNTAHIIL KKLRKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	5e-67	12	335	15	319	RING finger protein 113A
5z58_M	5e-67	12	335	15	319	RING finger protein 113A
6ff4_t	5e-67	12	335	15	319	RING finger protein 113A
6ff7_t	5e-67	12	335	15	319	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965542.1	0.0	zinc finger CCCH domain-containing protein 1
Swissprot	Q8GX84	1e-117	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	D8R3K9	0.0	D8R3K9_SELML; Uncharacterized protein
STRING	EFJ32962	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5896	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-105	C3H family protein

Link Out ? help Back to Top
Phytozome	406998
Entrez Gene	9635687

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]