PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

406691

Common Name

SELMODRAFT_406691

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 465aa MW: 52993.9 Da PI: 7.3413

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
406691	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	152.4	4.3e-47	109	329	3	237
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 +lL++cA+av++++ +++++l+ ++ +las + +p++++a yft+A arla+ + ++y+a++ t+ ++++++ P l+ + aNq+Il+a 406691 109 SLLMDCARAVAANNSTEVNELVREIITLASHQSRPVEKAALYFTNAFVARLAGCGARMYAAMRQDVTR----MQSISIR----MNLPSLRATERFANQMILDA 203 79*************************************************999999988877776....3333332....346************* PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 g++rvHi+D++i +G QWp+L++aL++R+egpp ++iTg++ p+ +le+tg+rL ++Ae++g+++ef+ +++ ++e+ +++ E l Vn++l 406691 204 CRGAKRVHIVDYGILYGDQWPSLIKALSERAEGPPLFKITGIDFPS---LVNLEKTGNRLVDYAESCGMHLEFHSIATAAWESAQPRYH--LFSELLFVNCQL 301 ****************************************65...899*******************98889999877643..238***** PP GRAS 209 qlhrlldesvsleserdevLklvkslsPk 237 ++ ++ e++ ++s+r+ + + + s +P 406691 302 RMRHIR-EDGIIDSPRKLFFEKILSFKPV 329 96.99999999**9999999985 PP
2	GRAS	40.6	4e-13	368	453	286	374
GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ +++ ++ v+ac g++r+er ++++W + ++ F+++p+s++a + + ++ + ++ ++ ++++l+lgWkd L ++S+W+ 406691 368 DKF-IEKCAMGVIACDGQNRVERISSYKTWDRLARKGQFGQLPVSKQALEMVMSVWSGHE--NFTYGMDENWLLLGWKDAVLNALSVWE 453 444.8888999************************************99999998888..59**********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.647	81	435	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-44	109	329	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-10	368	453	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDSDLCLQLR AALLRHQIPL EPVQAQISSQ QHHSLFDRSR LDYLTRILEE NDEELLLQLP 60 QQQQTSYQVL LRELTECLSP NSCARSSLSM DTASPPHSLS RTSTVSFHSL LMDCARAVAA 120 NNSTEVNELV REIITLASHQ SRPVEKAALY FTNAFVARLA GCGARMYAAM RQDVTRMQSI 180 SIRMNLPSLR ATERFANQMI LDACRGAKRV HIVDYGILYG DQWPSLIKAL SERAEGPPLF 240 KITGIDFPSL VNLEKTGNRL VDYAESCGMH LEFHSIATAA WESAQPRYHL FSELLFVNCQ 300 LRMRHIREDG IIDSPRKLFF EKILSFKPVM FSSPWCTLRW ALRFHPPLRR GLEELSGEDG 360 VSQLDFMDKF IEKCAMGVIA CDGQNRVERI SSYKTWDRLA RKGQFGQLPV SKQALEMVMS 420 VWSGHENFTY GMDENWLLLG WKDAVLNALS VWEPIEKLPR FKHQ*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDSDLCLQLR AALLRHQIPL EPVQAQISSQ QHHSLFDRSR LDYLTRILEE NDEELLLQLP  60
QQQQTSYQVL LRELTECLSP NSCARSSLSM DTASPPHSLS RTSTVSFHSL LMDCARAVAA  120
NNSTEVNELV REIITLASHQ SRPVEKAALY FTNAFVARLA GCGARMYAAM RQDVTRMQSI  180
SIRMNLPSLR ATERFANQMI LDACRGAKRV HIVDYGILYG DQWPSLIKAL SERAEGPPLF  240
KITGIDFPSL VNLEKTGNRL VDYAESCGMH LEFHSIATAA WESAQPRYHL FSELLFVNCQ  300
LRMRHIREDG IIDSPRKLFF EKILSFKPVM FSSPWCTLRW ALRFHPPLRR GLEELSGEDG  360
VSQLDFMDKF IEKCAMGVIA CDGQNRVERI SSYKTWDRLA RKGQFGQLPV SKQALEMVMS  420
VWSGHENFTY GMDENWLLLG WKDAVLNALS VWEPIEKLPR FKHQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-21	111	452	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525858.1	0.0	scarecrow-like protein 31
TrEMBL	D8R154	0.0	D8R154_SELML; Uncharacterized protein
STRING	EFJ33841	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	7e-52	GRAS family protein

Link Out ? help Back to Top
Phytozome	406691
Entrez Gene	9633640

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]