PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 405321
Common NameSELMODRAFT_405321
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 539aa    MW: 60266.5 Da    PI: 9.5022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
405321genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-14230314598
             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
              +++ v  s+ l++p++ a + ++kk +++t+ l+de+g++W +    + +    ++ +GW++ ++++ Lk g++++F+++g  +++l++k+f 
  405321 230 VIHKPVRFSH-LSVPRRLA-KDQLKKLCNTTVFLQDERGQEWPIGT--NEHA---YFCSGWNRLARDKSLKGGEVILFMHEG--RGRLRFKIFA 314
             5566777777.9******9.6678999*******************..5554...7888********************766..6667999985 PP
2B334.24.6e-114635371697
             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             l++ ++fae++   ++++ t ++ d ++  W+vk    +  +++vl++GW eF++ + Lk  D+++F+l+ ++ f   v+++
  405321 463 LSVRREFAERYL--PRKPATTSVVDGDSTLWTVKW--LGI-RACVLGAGWPEFARHHVLKKLDICLFELITQRAF--QVRIY 537
             78999******5..45778999*************..555.479*************************987777..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007801.5E-533213IPR013233Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1
PfamPF083201.1E-2136205IPR013233Glycosylphosphatidylinositol-mannosyltransferase I, PIG-X/PBN1
Gene3DG3DSA:2.40.330.102.7E-14219316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.998225316IPR003340B3 DNA binding domain
CDDcd100177.28E-12227313No hitNo description
PfamPF023623.2E-11231314IPR003340B3 DNA binding domain
SMARTSM010191.2E-9231316IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-14235319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-14445538IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-12446538IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.7448538IPR003340B3 DNA binding domain
SMARTSM010190.011451538IPR003340B3 DNA binding domain
CDDcd100171.52E-11463538No hitNo description
PfamPF023622.2E-8463537IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006506Biological ProcessGPI anchor biosynthetic process
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MKPPRAILLV AVLGAIAHLI RGNEVVKFAR TLEGSGSHRE LKTDISLQLD DKFQGDSCRL  60
SLVENLPSSV FADTFQLQRL TRMGRYEAAH VSGDLDLERP AFFSGPVTVR IQVSLDQNAN  120
VFHAETSLPL HARYAPLGID SYHLINLSSP SVAVSCKKNA EELQLELAAS EEVQWPIPAG  180
NPDDASTVNR FTALAAAAGT LVLCSISVMK KRVVILEMAD EREKVWFVRV IHKPVRFSHL  240
SVPRRLAKDQ LKKLCNTTVF LQDERGQEWP IGTNEHAYFC SGWNRLARDK SLKGGEVILF  300
MHEGRGRLRF KIFAADGADR QDFGTERFCG RPPRIGGSKH RKIVRKPRIV KKPAPKLAVP  360
VCVQAVVKEE VEESGMLGDA EPAVVAMAEE QSPDDHEPAV EPSPELPHHR ESSPPFLERN  420
LRSRPPLVRS KLHLHRLAMD AALAYKSDKP TFIVKIQGDE TVLSVRREFA ERYLPRKPAT  480
TSVVDGDSTL WTVKWLGIRA CVLGAGWPEF ARHHVLKKLD ICLFELITQR AFQVRIYR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338347KHRKIVRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024522671.10.0B3 domain-containing protein Os01g0723500
TrEMBLD8QWZ30.0D8QWZ3_SELML; Uncharacterized protein
STRINGEFJ353190.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-08B3 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]