PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

404767

Common Name

SELMODRAFT_404767

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 303aa MW: 33442.1 Da PI: 6.7094

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
404767	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.7	2.8e-10	227	267	10	55
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r RR+riN+++ +L+ l+P+ a K++ +++Le+A++Y+k Lq 404767 227 RHRRERINERLKTLQHLVPNgA------KVDIVTMLEEAIHYVKFLQ 267 89****************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-14	216	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.888	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-13	221	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-12	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-10	226	270	No hit	No description
Pfam	PF00010	1.3E-7	227	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0016049	Biological Process	cell growth
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048766	Biological Process	root hair initiation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDDCCSSLLP PASARAHHHS HSSPDQDQAS SNNSLSDISS SFFDQDYDWA SLQQPQRSNA 60 DSSTELLNSS TLISQSQQTL DQFGGFNLNF LIASSRPYGQ QYETAVPCFQ MVSPAMQVKP 120 LKSLKRESLD QSTLVNCEDN SPGSARSGVF NPNCSELEQR QPFTAASDLI SNKRQCLDQR 180 LQGWSSPTNE SKHKLSSVNF AGPALNTNGK PRAKRGSATD PQSVYARHRR ERINERLKTL 240 QHLVPNGAKV DIVTMLEEAI HYVKFLQLQV NMLSSDEYWT YAPTTYNGPE TPLGLKLPLT 300 GS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024540992.1	0.0	transcription factor bHLH76-like
TrEMBL	D8QWB7	0.0	D8QWB7_SELML; Uncharacterized protein
STRING	EFJ36606	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1048	14	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	404767
Entrez Gene	9643353

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]