PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 404338 | ||||||||
Common Name | SELMODRAFT_404338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 31917.5 Da PI: 10.9614 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.8 | 3.1e-09 | 114 | 154 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W + I++ +k+++lg+ t+e+Aa ++++a+ 404338 114 RGVYF--KNMKWQSAIKVG-----KKQVHLGTVSTKEDAAHLYDRAAY 154 9**98..47*********4.....6********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0039 | 114 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-6 | 114 | 156 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-6 | 119 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MRHRLLARSK KFVLNHQVFF PDSLTSDAVT GYYSMVSIRR RRLIAASAVI VKRRKKRTLR 60 PCTPETSSKS LLAKFSSPTG SGAGNGAHSR SRSAEFEIKK RTYQRKKHNT LCLRGVYFKN 120 MKWQSAIKVG KKQVHLGTVS TKEDAAHLYD RAAYMCGRVP NFELSQTVKL ELDALTWEEF 180 LDLTRKEIAN KKLRRRMEAQ QTRHGQLQQQ QQQQQDEEQE EASVSSLFER NCIHRSERLV 240 FEVGSQYIRS SVLRIESDEL IKRTLSNRNI AVNTAGT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 56 | RRRLIAASAVIVKRRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024519541.1 | 1e-138 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | D8QV08 | 0.0 | D8QV08_SELML; Uncharacterized protein | ||||
STRING | EFJ36388 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8022 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 404338 |
Entrez Gene | 9662190 |
Publications ? help Back to Top | |||
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