PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

402580

Common Name

SELMODRAFT_402580, SELMODRAFT_408289

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 284aa MW: 32134 Da PI: 8.7602

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402580	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.9	1.1e-17	29	113	2	81
trihelix 2 WtkqevlaLiearremeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt +e++ Li+a++ ++er rgk ++ +W++v +++++ g++rs++qC++kw+nl ++ykk+++ e k +++++s +++ 402580 29 WTFHETMILITAKKLDDERRAkggdkRGKCAEYRWKWVENYCWKNGCQRSQNQCNDKWDNLLRDYKKVRDYETKIQPGQQSYWQL 113 ************888888833333468999*****************************************9999988864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	21	90	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.1E-4	22	92	IPR009057	Homeodomain-like
Pfam	PF13837	3.2E-13	28	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAADCTAIIP FDEAGEGSER PREYRKGNWT FHETMILITA KKLDDERRAK GGDKRGKCAE 60 YRWKWVENYC WKNGCQRSQN QCNDKWDNLL RDYKKVRDYE TKIQPGQQSY WQLEKHERKE 120 RGLPSSLMIQ IYDALHDIVD KRLPSSSSRL MAASDKAHTT SYLPLPPQST ASRSSGSSEQ 180 LGDPKSPAKK RKSSSRDHHQ QDVEGLAPAV ARSASDLSHT LMQCEEKKDR RHKDLLSVEE 240 RKLMLEETKT EISRQGIEGL VGAVNNLANA ILTLASERGG SGE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	191	PKSPAKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960379.1	0.0	trihelix transcription factor ASR3
Refseq	XP_002967337.1	0.0	trihelix transcription factor ASR3
TrEMBL	D8QR48	0.0	D8QR48_SELML; Uncharacterized protein
STRING	EFJ31936	0.0	(Selaginella moellendorffii)
STRING	EFJ37918	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-48	Trihelix family protein

Link Out ? help Back to Top
Phytozome	402580
Entrez Gene	9635367 \| 9656190

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]