PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39737 | ||||||||
Common Name | SELMODRAFT_84885, WOX1-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 61aa MW: 7235.08 Da PI: 5.5753 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.9 | 4.7e-15 | 3 | 61 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56 +R+ +++eql +Le+l+ k ps+e ++e+ + + ++e++V++WFqN++a+e+ 39737 3 ERWLPNREQLAVLEDLYSKGTMPSQENIAEIVDLVdhdhgPVSESKVYFWFQNKKARER 61 7********************************99***999****************98 PP | |||||||
2 | Wus_type_Homeobox | 65.7 | 9.3e-22 | 2 | 61 | 3 | 62 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLe.eyGkiedkNVfyWFQNrkaRer 62 ++RW P+ eQ+ +Le+ly++G+ P++e+i +i + +G +++ V++WFQN+kaRer 39737 2 HERWLPNREQLAVLEDLYSKGT-MPSQENIAEIVDLVDhDHGPVSESKVYFWFQNKKARER 61 68*******************8.5*********9988527*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.612 | 1 | 61 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 3 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.82E-12 | 3 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.8E-13 | 3 | 61 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.26E-7 | 4 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
PHERWLPNRE QLAVLEDLYS KGTMPSQENI AEIVDLVDHD HGPVSESKVY FWFQNKKARE 60 R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024529082.1 | 9e-34 | WUSCHEL-related homeobox 6 | ||||
TrEMBL | D8R3W4 | 6e-39 | D8R3W4_SELML; Uncharacterized protein WOX1-1 | ||||
STRING | EFJ33357 | 1e-39 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 2e-11 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | 39737 |
Entrez Gene | 9636004 |
Publications ? help Back to Top | |||
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