PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39737
Common NameSELMODRAFT_84885, WOX1-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WOX
Protein Properties Length: 61aa    MW: 7235.08 Da    PI: 5.5753
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39737genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.94.7e-15361356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56
              +R+ +++eql +Le+l+ k   ps+e ++e+ + +      ++e++V++WFqN++a+e+
     39737  3 ERWLPNREQLAVLEDLYSKGTMPSQENIAEIVDLVdhdhgPVSESKVYFWFQNKKARER 61
              7********************************99***999****************98 PP

2Wus_type_Homeobox65.79.3e-22261362
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLe.eyGkiedkNVfyWFQNrkaRer 62
                       ++RW P+ eQ+ +Le+ly++G+  P++e+i +i    +  +G +++  V++WFQN+kaRer
              39737  2 HERWLPNREQLAVLEDLYSKGT-MPSQENIAEIVDLVDhDHGPVSESKVYFWFQNKKARER 61
                       68*******************8.5*********9988527*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.612161IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-10361IPR009057Homeodomain-like
SuperFamilySSF466892.82E-12361IPR009057Homeodomain-like
PfamPF000469.8E-13361IPR001356Homeobox domain
CDDcd000866.26E-7461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
PHERWLPNRE QLAVLEDLYS KGTMPSQENI AEIVDLVDHD HGPVSESKVY FWFQNKKARE  60
R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529082.19e-34WUSCHEL-related homeobox 6
TrEMBLD8R3W46e-39D8R3W4_SELML; Uncharacterized protein WOX1-1
STRINGEFJ333571e-39(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.12e-11WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]