PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 38494 | ||||||||
Common Name | SELMODRAFT_38494, SELMODRAFT_38495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 81aa MW: 9138.49 Da PI: 10.6628 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 69.5 | 5.8e-22 | 23 | 74 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p + + +r++lg+f+ta eAa+a+++a++k++ge 38494 23 CQYRGVRQRV-WGKWVAEIREP---N-CgARIWLGTFDTAVEAARAYDQAALKYFGE 74 78******99.**********8...3.57*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.72E-28 | 23 | 81 | No hit | No description |
Pfam | PF00847 | 6.0E-15 | 23 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.26 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 24 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-31 | 24 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-30 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
RPQLKRSRKG CMKGKGGPEN AACQYRGVRQ RVWGKWVAEI REPNCGARIW LGTFDTAVEA 60 ARAYDQAALK YFGENARLNL P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 24 | 81 | 5 | 63 | ATERF1 |
3gcc_A | 2e-18 | 24 | 81 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024529646.1 | 3e-53 | ethylene-responsive transcription factor ABI4-like | ||||
Swissprot | P61827 | 4e-36 | DRE2G_ARATH; Dehydration-responsive element-binding protein 2G | ||||
Swissprot | Q9LQZ2 | 1e-36 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | D8RC20 | 1e-52 | D8RC20_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ08920 | 2e-53 | (Selaginella moellendorffii) | ||||
STRING | EFJ29774 | 2e-53 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 5e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 38494 |
Entrez Gene | 9629545 | 9650768 |
Publications ? help Back to Top | |||
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