PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 35059
Common NameSELMODRAFT_35059
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 218aa    MW: 24979.5 Da    PI: 8.8486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
35059genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-054367123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             y+C+  +Cgk+F+    L++H  +H
    35059 43 YVCTfeNCGKVFTEAPALRKHAHVH 67
             99*******************9887 PP
2zf-C2H219.52.7e-067296123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             + C+   Cgk+F ++s LkrH   H
    35059 72 FICHydGCGKRFVDSSKLKRHFLIH 96
             78*******************8877 PP
3zf-C2H221.56.3e-07104124323
              ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
              C+ Cgk Fs   nL++H+rtH
    35059 104 CKFCGKAFSLDFNLRSHMRTH 124
              ********************9 PP
4zf-C2H216.42.5e-05130154123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              ++Cp  dCgk++ + + L+ H++tH
    35059 130 HTCPyeDCGKRYAHEYKLRGHLKTH 154
              79**********************6 PP
5zf-C2H212.10.00058193218123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              + Cp   C+k++   + L+ H+++ H
    35059 193 FACPykGCDKRYFYEYKLNLHLKRgH 218
              78*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-124069IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00154367IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5314372IPR007087Zinc finger, C2H2
SuperFamilySSF576679.99E-64468No hitNo description
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-147092IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.29E-1471124No hitNo description
PROSITE profilePS5015713.77572101IPR007087Zinc finger, C2H2
SMARTSM003550.00147296IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807496IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-1893123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.544102129IPR007087Zinc finger, C2H2
SMARTSM003550.006102124IPR015880Zinc finger, C2H2-like
PfamPF138940.0011102124No hitNo description
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-10110156No hitNo description
Gene3DG3DSA:3.30.160.606.7E-13124155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.827130154IPR007087Zinc finger, C2H2
SMARTSM003550.0061130154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
SuperFamilySSF576674.66E-5189215No hitNo description
Gene3DG3DSA:3.30.160.604.6E-7189215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.057193218IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829193218IPR007087Zinc finger, C2H2
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
VPQDTVLSTG KCRLLKWIND DTMNLMKTKH LDQDADLDYE IVYVCTFENC GKVFTEAPAL  60
RKHAHVHGEK QFICHYDGCG KRFVDSSKLK RHFLIHTGEK HFLCKFCGKA FSLDFNLRSH  120
MRTHTGENYH TCPYEDCGKR YAHEYKLRGH LKTHHDKLLP DGKQVPLTLE SDTSKTSPAA  180
TAAAAATGGG RPFACPYKGC DKRYFYEYKL NLHLKRGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-33421545117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966727.21e-163zinc finger transcription factor YY1
SwissprotQ2V3L34e-76YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLD8R4Z61e-161D8R4Z6_SELML; Uncharacterized protein (Fragment)
STRINGEFJ327541e-162(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-77C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]