PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

32919

Common Name

SELMODRAFT_450625

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 352aa MW: 39753.7 Da PI: 8.1959

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
32919	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	218.7	3e-67	1	352	8	373
GRAS 8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111 cA+av++++ +++ +l+ +++ ++++ + ++R a +f++AL arl + +s+ly+al+ + ++ ++ l+ P++ + ++ N+ Ilea +g++r 32919 1 CARAVAARNSAQVYNLIGLIKNSVTSENSHLERTALFFVNALVARLKGCGSQLYSALSREVSQ-------KRYVGLLCMNLPWFSATEVISNHIILEACKGAKR 97 9*********************************************999999877654443.......4677889999******************** PP GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll 214 +Hi+D++i +G QWp L++aL+++peg+p lR+Tg++s + ++g+ L +fAe +g+pfefn ++a+++e ++ ++++ +E +++n +l l 32919 98 IHIVDYGILYGSQWPWLIRALSQQPEGAPLLRMTGIDS---SGMIDGAQIGKHLLEFAELCGIPFEFNYITADSWELAQP---QCNSlNEFVVINTNRRLRFLR 195 **********************************...5788999*****************98887777755...466669*********** PP GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 d+s++ +++r+ + + + +l+P +++ + q ad +s+ F++rf +l yy+ +++ + + l +++ ++ r++++r+i+nvvaceg +r+er + W 32919 196 DDSTAANNPRKVFFDRMLKLQPALLIQSLQSADPnvSSPFFVQRFEATLAYYANILNGFGEVL-KDHPQELGFARKFVERSIMNVVACEGVDRVERPGPYYYWD 298 **********************99999876336789***************8886.8889999999999*********************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++aGF+++pls+++ ++a+l+ r k +++ + ++l+l Wkd + ++aW 32919 299 STAKKAGFEQLPLSDQVIETARLIWRGEK---FSLYRDGHWLLLAWKDALAFGICAW 352 ********************99988...99********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.0E-64	1	352	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	40.276	1	336	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
CARAVAARNS AQVYNLIGLI KNSVTSENSH LERTALFFVN ALVARLKGCG SQLYSALSRE 60 VSQKRYVGLL CMNLPWFSAT EVISNHIILE ACKGAKRIHI VDYGILYGSQ WPWLIRALSQ 120 QPEGAPLLRM TGIDSSGMID GAQIGKHLLE FAELCGIPFE FNYITADSWE LAQPQCNSLN 180 EFVVINTNRR LRFLRDDSTA ANNPRKVFFD RMLKLQPALL IQSLQSADPN VSSPFFVQRF 240 EATLAYYANI LNGFGEVLKD HPQELGFARK FVERSIMNVV ACEGVDRVER PGPYYYWDST 300 AKKAGFEQLP LSDQVIETAR LIWRGEKFSL YRDGHWLLLA WKDALAFGIC AW

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

CARAVAARNS AQVYNLIGLI KNSVTSENSH LERTALFFVN ALVARLKGCG SQLYSALSRE  60
VSQKRYVGLL CMNLPWFSAT EVISNHIILE ACKGAKRIHI VDYGILYGSQ WPWLIRALSQ  120
QPEGAPLLRM TGIDSSGMID GAQIGKHLLE FAELCGIPFE FNYITADSWE LAQPQCNSLN  180
EFVVINTNRR LRFLRDDSTA ANNPRKVFFD RMLKLQPALL IQSLQSADPN VSSPFFVQRF  240
EATLAYYANI LNGFGEVLKD HPQELGFARK FVERSIMNVV ACEGVDRVER PGPYYYWDST  300
AKKAGFEQLP LSDQVIETAR LIWRGEKFSL YRDGHWLLLA WKDALAFGIC AW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-27	1	352	11	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979121.2	0.0	scarecrow-like protein 33
TrEMBL	D8S702	0.0	D8S702_SELML; GRAS family protein
STRING	EFJ19529	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	5e-61	GRAS family protein

Link Out ? help Back to Top
Phytozome	32919
Entrez Gene	9634139

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]