PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28262 | ||||||||
Common Name | SELMODRAFT_28262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 90aa MW: 9997.4 Da PI: 5.7815 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.8e-05 | 4 | 38 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+ YIk L 28262 4 KLGERITALQQLVAPF-----GKTDTASVLLEAIGYIKFL 38 6668899999999998.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.97E-6 | 1 | 43 | No hit | No description |
PROSITE profile | PS50888 | 11.839 | 1 | 38 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-11 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-9 | 3 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
RKEKLGERIT ALQQLVAPFG KTDTASVLLE AIGYIKFLHD QVQVMSQITL NTSPNNDEPR 60 QDLRSRGLCL VPISCTLQVA NDNGADFWTP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002527479.2 | 4e-41 | transcription factor bHLH113 | ||||
Swissprot | Q7XHI5 | 3e-33 | BH133_ARATH; Transcription factor bHLH133 | ||||
Swissprot | Q9LT67 | 2e-33 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | D8RPY7 | 1e-60 | D8RPY7_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ25564 | 2e-61 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 28262 |
Entrez Gene | 9637940 |
Publications ? help Back to Top | |||
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