PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

24851

Common Name

SELMODRAFT_450158

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 275aa MW: 31857.7 Da PI: 6.8952

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
24851	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	197.2	1e-60	2	274	98	374
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 aN +Il+ +g++r+HiiD++i +G QWp L+q L++Rpegpp ++iTg++ + ++et+++L ++A+++g+ +ef+v++++++e ++++ ++ ++ 24851 2 ANGTILDFCQGATRIHIIDYGIHYGCQWPQLIQRLSQRPEGPPVMKITGIDF----PRVDVKETERNLVEYAKSCGILLEFEVITSTSWELVQPK---THVNDL 98 9*************************************************....89*********************999999999876...5789 PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvv..vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 l+Vn+ l++ +l ++ +++r+ + + v sl+P++++ v + ++++s+ F +rf ale + + +d +++ l ++ e+ ++++ i+n+va+eg 24851 99 LIVNCNLRIRHLREDGSVGDNPRKLFFEKVYSLKPNLFIqcVWDAGSNLSSPFFIQRFEGALESFFTKMDLFQTLLQEDMPEEYDFIGNIMAKTIMNMVAMEGV 202 **********866666667************983345666888999*********************9997777777777********** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 er er +++++W +r ++aGF++ p++ ka++ +k+ k + +++ + ++l+lgWk+r L+++S Wr 24851 203 ERLERPNSYRSWDSRARRAGFEQEPVRPKAVELVKAAWCSSKpNCNFKMGMDGNWLLLGWKERVLYAMSTWR 274 *******************************99988887888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.811	1	253	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-58	2	274	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
FANGTILDFC QGATRIHIID YGIHYGCQWP QLIQRLSQRP EGPPVMKITG IDFPRVDVKE 60 TERNLVEYAK SCGILLEFEV ITSTSWELVQ PKTHVNDLLI VNCNLRIRHL REDGSVGDNP 120 RKLFFEKVYS LKPNLFIQCV WDAGSNLSSP FFIQRFEGAL ESFFTKMDLF QTLLQEDMPE 180 EYDFIGNIMA KTIMNMVAME GVERLERPNS YRSWDSRARR AGFEQEPVRP KAVELVKAAW 240 CSSKPNCNFK MGMDGNWLLL GWKERVLYAM STWRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-20	2	274	97	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964999.2	0.0	scarecrow-like protein 31
Refseq	XP_024525502.1	0.0	scarecrow-like protein 31
TrEMBL	D8R146	0.0	D8R146_SELML; Uncharacterized protein (Fragment)
TrEMBL	D8S1B6	0.0	D8S1B6_SELML; GRAS family protein
STRING	EFJ21682	0.0	(Selaginella moellendorffii)
STRING	EFJ33837	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	5e-59	GRAS family protein

Link Out ? help Back to Top
Phytozome	24851
Entrez Gene	9638657

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]