PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

24847

Common Name

SELMODRAFT_450174

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 275aa MW: 31680.4 Da PI: 6.1495

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
24847	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	200.7	8.8e-62	2	274	98	374
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 aN +Il+ +g +r+HiiD++i +G QWp L+q L++Rpegpp ++iTg++ + ++et+++L ++A+++g+++ef++++++++e ++++ ++ ++ 24847 2 ANGTILDFCQGGTRIHIIDYGIHYGCQWPQLIQRLSQRPEGPPAMKITGIDF----PRVDVKETERNLVEYAKSCGISLEFEAITSTSWELVQPK---THVNDL 98 9*************************************************....89*********************999999999886...5789 PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvv..vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 l+Vn+ l++ +l ++ +++r+ + + v +l+P++++ vv+ ++++s+ F +rf ale + + +d +++ l +e +e+ + ++++ i+nvva+eg 24847 99 LIVNCNLRIRHLREDGSVGDNPRKLFFEKVYTLKPDLFIqcVVDAGSNLSSPFFIQRFEGALESFFMTMDLFQTLLQEEMSEEYDYIGNIMAKTIMNVVAMEGV 202 **********866666667***********9974478888999***********************99998888888888********** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 er er +++++W +r ++aGF++ p++ ka++ +k+ k + +++ + ++l+lgWk+r L+++S Wr 24847 203 ERLERPNSYRSWDSRARRAGFEQEPVRPKAVELVKAAWCSSKpNCNFKMGMDGNWLLLGWKERVLYAMSTWR 274 *******************************99988887888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.145	1	253	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-59	2	274	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
FANGTILDFC QGGTRIHIID YGIHYGCQWP QLIQRLSQRP EGPPAMKITG IDFPRVDVKE 60 TERNLVEYAK SCGISLEFEA ITSTSWELVQ PKTHVNDLLI VNCNLRIRHL REDGSVGDNP 120 RKLFFEKVYT LKPDLFIQCV VDAGSNLSSP FFIQRFEGAL ESFFMTMDLF QTLLQEEMSE 180 EYDYIGNIMA KTIMNVVAME GVERLERPNS YRSWDSRARR AGFEQEPVRP KAVELVKAAW 240 CSSKPNCNFK MGMDGNWLLL GWKERVLYAM STWRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-17	2	274	97	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002977074.1	0.0	scarecrow-like protein 31
TrEMBL	D8S1B9	0.0	D8S1B9_SELML; GRAS family protein
STRING	EFJ21683	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	2e-59	GRAS family protein

Link Out ? help Back to Top
Phytozome	24847
Entrez Gene	9638947

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]