PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

22449

Common Name

SELMODRAFT_450965

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 352aa MW: 39825.8 Da PI: 8.1959

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
22449	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	222.1	2.8e-68	1	352	8	373
GRAS 8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111 cA+av++++ +++ +l+ +++ ++++ + ++R a +f++AL arl + +s+ly+al+ + ++ +l l+ P++ + ++ N+ Ilea +g++r 22449 1 CARAVAARNSAQVYNLIGLIKNSVTSENSHLERTALFFVNALVARLKGCGSQLYSALSREVSQ-------KRYLGLLCMNLPWFSATEVISNHIILEACKGAKR 97 9*********************************************999999877554443.......4677889999******************** PP GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll 214 +Hi+D++i +G QWp L++aL++Rpeg+p lR+Tg++s + ++g+ L +fAe++g+pfefn ++++++e + ++++ +E +++n +l l 22449 98 IHIVDYGILYGSQWPWLIRALSQRPEGTPLLRMTGIDS---SGMIDGAQIGQHLLEFAESCGIPFEFNYITTDSWELA---QPQCNSlNEFVVINTNRRLRFLR 195 **********************************...5788999*****************966666655...55567779*********** PP GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 d+s++ +++r+ + + + +l+P +++ + +ad +s+ F++rf +l yy+ +++ + + l +++ ++ r++++r+i+nvvaceg +r+er + W 22449 196 DDSTAANNPRKVFFDRMLKLQPALLIQSLPNADPnvSSPFFVQRFEATLAYYANILNGFGEVL-KDHPQELAFARKFVERSIMNVVACEGVDRVERPGPYYYWD 298 *********************988666655227889***************8886.8899999999999*********************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++aGF+++pls+++ ++akl+ r k +++ + ++l+l Wk+ + ++aW 22449 299 STAKKAGFEQLPLSDQVIETAKLIWRGEK---FSLYRDGHWLLLAWKEALAFGICAW 352 ********************99988...99***********9999*9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.832	1	336	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-66	1	352	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
CARAVAARNS AQVYNLIGLI KNSVTSENSH LERTALFFVN ALVARLKGCG SQLYSALSRE 60 VSQKRYLGLL CMNLPWFSAT EVISNHIILE ACKGAKRIHI VDYGILYGSQ WPWLIRALSQ 120 RPEGTPLLRM TGIDSSGMID GAQIGQHLLE FAESCGIPFE FNYITTDSWE LAQPQCNSLN 180 EFVVINTNRR LRFLRDDSTA ANNPRKVFFD RMLKLQPALL IQSLPNADPN VSSPFFVQRF 240 EATLAYYANI LNGFGEVLKD HPQELAFARK FVERSIMNVV ACEGVDRVER PGPYYYWDST 300 AKKAGFEQLP LSDQVIETAK LIWRGEKFSL YRDGHWLLLA WKEALAFGIC AW

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

CARAVAARNS AQVYNLIGLI KNSVTSENSH LERTALFFVN ALVARLKGCG SQLYSALSRE  60
VSQKRYLGLL CMNLPWFSAT EVISNHIILE ACKGAKRIHI VDYGILYGSQ WPWLIRALSQ  120
RPEGTPLLRM TGIDSSGMID GAQIGQHLLE FAESCGIPFE FNYITTDSWE LAQPQCNSLN  180
EFVVINTNRR LRFLRDDSTA ANNPRKVFFD RMLKLQPALL IQSLPNADPN VSSPFFVQRF  240
EATLAYYANI LNGFGEVLKD HPQELAFARK FVERSIMNVV ACEGVDRVER PGPYYYWDST  300
AKKAGFEQLP LSDQVIETAK LIWRGEKFSL YRDGHWLLLA WKEALAFGIC AW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-28	1	352	11	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002987970.2	0.0	scarecrow-like protein 14
TrEMBL	D8SX92	0.0	D8SX92_SELML; GRAS family protein
STRING	EFJ11044	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	3e-61	GRAS family protein

Link Out ? help Back to Top
Phytozome	22449
Entrez Gene	9651991

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]