PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 22445 | ||||||||
Common Name | SELMODRAFT_450593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 352aa MW: 39781.8 Da PI: 8.3755 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 221.9 | 3.1e-68 | 1 | 352 | 8 | 373 |
GRAS 8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111 cA+av++++ +++ +l+ +++ ++++ + ++R a +f++AL arl + +s+ly+al+ + ++ ++ l+ P++ + ++ N+ Ilea +g++r 22445 1 CARAVAARNSAQVYNLIGLIKNSVTSENSHLERTALFFVNALVARLKGCGSQLYSALSREVSQ-------KRYVGLLCMNLPWFSATEVISNHIILEACKGAKR 97 9***********************************************999999877654443.......4677889999************************ PP GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll 214 +Hi+D++i +G QWp L++aL++Rpeg+p lR+Tg++s + ++g+ L +fAe +g+pfefn ++a+++e ++ ++++ +E +++n +l l 22445 98 IHIVDYGILYGSQWPWLIRALSQRPEGAPLLRMTGIDS---SGMIDGAQIGKHLLEFAELCGIPFEFNYITADSWELAQP---QCNSlNEFVVINTNRRLRFLR 195 **************************************...5788999*********************98887777755...466669*************** PP GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 d+s++ +++r+ + + + +l+P +++ + q ad +s+ F++rf +l yy+ +++ + + l +++ ++ r++++r+i+nvvaceg +r+er + W 22445 196 DDSTAANNPRKVFFDRMLKLQPALLIQSLQSADPnvSSPFFVQRFEATLAYYANILNGFGEVL-KDHPQELGFARKFVERSIMNVVACEGVDRVERPGPYYYWD 298 **************************99999876336789*******************8886.8889999999999*************************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++aGF+++pls+++ ++a+l+ r k +++ + ++l+l Wkd + ++aW 22445 299 STAKKAGFEQLPLSDQVIETARLIWRGEK---FSLYRDGHWLLLAWKDALAFGICAW 352 ************************99988...99**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.754 | 1 | 336 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-65 | 1 | 352 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
CARAVAARNS AQVYNLIGLI KNSVTSENSH LERTALFFVN ALVARLKGCG SQLYSALSRE 60 VSQKRYVGLL CMNLPWFSAT EVISNHIILE ACKGAKRIHI VDYGILYGSQ WPWLIRALSQ 120 RPEGAPLLRM TGIDSSGMID GAQIGKHLLE FAELCGIPFE FNYITADSWE LAQPQCNSLN 180 EFVVINTNRR LRFLRDDSTA ANNPRKVFFD RMLKLQPALL IQSLQSADPN VSSPFFVQRF 240 EATLAYYANI LNGFGEVLKD HPQELGFARK FVERSIMNVV ACEGVDRVER PGPYYYWDST 300 AKKAGFEQLP LSDQVIETAR LIWRGEKFSL YRDGHWLLLA WKDALAFGIC AW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-28 | 1 | 352 | 11 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002991317.2 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | D8T6Y4 | 0.0 | D8T6Y4_SELML; GRAS family protein | ||||
STRING | EFJ07615 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-61 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 22445 |
Entrez Gene | 9639431 |
Publications ? help Back to Top | |||
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