PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 19476 | ||||||||
Common Name | SELMODRAFT_97273 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 87aa MW: 10510.1 Da PI: 10.4734 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.1e-20 | 2 | 55 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le Fe+++++ e++++LA++lgL+ rqV vWFqNrRa++k 19476 2 KKRRLSVDQVRSLELNFEMENKLEPERKKQLAHELGLQPRQVAVWFQNRRARWK 55 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.5 | 1.3e-41 | 1 | 85 | 1 | 85 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrls +qv++LE +Fe+e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+Lk++yd+l en++L++ev+ 19476 1 EKKRRLSVDQVRSLELNFEMENKLEPERKKQLAHELGLQPRQVAVWFQNRRARWKTKQLERDYESLKASYDKLLLENKKLQAEVS 85 69*******************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.54 | 1 | 57 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-14 | 1 | 61 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.9E-17 | 2 | 55 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-18 | 2 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.27E-12 | 2 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 4 | 65 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.7E-6 | 28 | 37 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 32 | 55 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.7E-6 | 37 | 53 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-10 | 57 | 86 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
EKKRRLSVDQ VRSLELNFEM ENKLEPERKK QLAHELGLQP RQVAVWFQNR RARWKTKQLE 60 RDYESLKASY DKLLLENKKL QAEVSSV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 57 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002971993.2 | 3e-52 | homeobox-leucine zipper protein HDG1 | ||||
Refseq | XP_002972528.2 | 3e-52 | homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q02283 | 2e-36 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q8S7W9 | 4e-36 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | D8RMX9 | 3e-54 | D8RMX9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ26614 | 4e-55 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-39 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | 19476 |
Entrez Gene | 9651346 |
Publications ? help Back to Top | |||
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