PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 177195
Common NameSELMODRAFT_177195, SELMODRAFT_423855
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GATA
Protein Properties Length: 308aa    MW: 33739.6 Da    PI: 6.4726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
177195genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24e-17238274135
    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++Cgt +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  177195 238 CTHCGTGErsTPMMRRGPSGPRTLCNACGLMWANKGV 274
             ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.90193128IPR010399Tify domain
SMARTSM009792.9E-1093128IPR010399Tify domain
PfamPF062007.2E-1396127IPR010399Tify domain
PROSITE profilePS5101712.858161203IPR010402CCT domain
PfamPF062033.5E-15161203IPR010402CCT domain
SMARTSM004014.0E-14232285IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.605232288IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13234286No hitNo description
Gene3DG3DSA:3.30.50.104.2E-16237279IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440238265IPR000679Zinc finger, GATA-type
CDDcd002021.66E-16238280No hitNo description
PfamPF003208.5E-15238274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAAEGHIHAH HQNVHSMHVD DTDEVGEEIE GVNHLHPHSH MHMHEDHGLH DHHHDIEIED  60
QDDEEQDGEG LDEAEMHSDG GHPVEPPAAL TGRSHATTQL TLSYQGEVYV FDTVAPEKVQ  120
EVLLLLGGRE IQSSLPGASM PGHHYGKGLS ELPSRMNMPQ RITALTRFRE KRKERCYDKK  180
IRYTVRKEVA QRMHRKKGQF ASSKVLQEEA AAKANGSSPP TPGQPTPPGG APQPEILCTH  240
CGTGERSTPM MRRGPSGPRT LCNACGLMWA NKGVLRDLSK NAQAPGSVLQ IPTLTQSESE  300
GHKPDPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978709.10.0GATA transcription factor 24 isoform X2
RefseqXP_002984637.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL72e-74GAT24_ARATH; GATA transcription factor 24
TrEMBLD8S6210.0D8S621_SELML; Uncharacterized protein
STRINGEFJ142820.0(Selaginella moellendorffii)
STRINGEFJ201560.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]