PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 17503 | ||||||||
Common Name | SELMODRAFT_17503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 143aa MW: 15764.6 Da PI: 6.0061 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69.9 | 4.1e-22 | 2 | 55 | 6 | 59 |
ZF-HD_dimer 6 YkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 YkeC +N a+ Gg+ + DGC+ f+++ g++g+++alkCaACgCHRnFH +e+e+ 17503 2 YKECVRNINAENGGEeVHDGCQKFTAA-GKDGSPEALKCAACGCHRNFHQQESET 55 *******99999986378********9.999*******************99875 PP | |||||||
2 | Homeobox | 28.7 | 2.3e-09 | 88 | 143 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +rkRt f++eql+ Le+l e + ++ +++ + A+++g+t + k+WF+Nr+ 17503 88 KRKRTIFSAEQLTKLEALAEsvhwSLGNIPKDQQASAAMEIGITVESLKYWFHNRK 143 79***************99955555678999999999******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.6E-23 | 2 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.8E-18 | 2 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-12 | 2 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.595 | 2 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-17 | 76 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-12 | 79 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.224 | 85 | 143 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-6 | 88 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.52E-4 | 88 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
LYKECVRNIN AENGGEEVHD GCQKFTAAGK DGSPEALKCA ACGCHRNFHQ QESETPTAIK 60 GSDLTQFADD ILGVDKAQSP DDSTPKEKRK RTIFSAEQLT KLEALAESVH WSLGNIPKDQ 120 QASAAMEIGI TVESLKYWFH NRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024542672.1 | 2e-49 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024543727.1 | 2e-49 | zinc-finger homeodomain protein 2 | ||||
TrEMBL | D8SEU6 | 1e-103 | D8SEU6_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ16933 | 1e-104 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-23 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | 17503 |
Entrez Gene | 9634565 |
Publications ? help Back to Top | |||
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