PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

122435

Common Name

SELMODRAFT_450940

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 448aa MW: 48740.5 Da PI: 5.1314

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
122435	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	299.1	1.1e-91	70	445	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn......sseelaalklfsevsPilkfsh 95 lv+lL++c + ++sg+++ a La+l+ +as++g+++++ a yf +L+arl+r ++ ++ +e+s + ++a+k++ +++P+lkf+h 122435 70 LVQLLVSCLDDMESGQASSAMDKLATLKAMASSSGNAVEKCAWYFSSGLEARLHRrGGNDHSDGDdDEEEES--PssspnkAEAIAMAYKTLTDACPYLKFAH 170 689*************************************************943333333222122222..123454477788999********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele. 192 ltaNqa+lea++g+ ++Hi+D++ +qG+QW+a+lqa+a+ p +++p slRiTg+ sp+ g + ++ +t++rL++fA+ lgv+f+f + + + + d++++ 122435 171 LTANQALLEATDGAPKIHIVDYGTMQGVQWAAFLQAFATWPakNPSPrSLRITGIPSPHLGsnPAPAMLATQRRLTDFAKLLGVDFQFCP-ILEPIRDFQPSq 272 **********************************99966444469****9998889999*******************.699999999852 PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +Lr++p+E++aVn+vlql +l+ +l ++ +lv++l+P++v+v+e ea+ n++s+ +++++ ++ys++f+sl++ lp ++ +ri+ Er ++grei+ 122435 273 SLRTDPDEVVAVNFVLQLAQLP--APAL----KRAFSLVQRLNPRIVTVAEYEAN-NGASLRDQLASNARFYSSVFESLDVALPGDDAQRITAERLFFGREIT 368 6****************9..3333....3689**************9.5999***************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + + ++ e e+ ++W++ ++ aG+ +++ls+++++qa+lll ++ s+ +++ + gsl lgW + ++v+vSaW 122435 369 KSLVEGTN--CECPEKQREWQRCIDGAGLWSAALSHYTVSQARLLLWLYNkSENFTLLQGPGSLSLGWLGTSIVTVSAW 445 9976555..59***********************************9999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.929	44	425	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-89	70	445	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MSSSCCSSDQ QQWDISSFTT GPATTTTTTT TGGDEHLAAN PQHVSTTTVN LRSQHHQEQQ 60 QDRGGALEQL VQLLVSCLDD MESGQASSAM DKLATLKAMA SSSGNAVEKC AWYFSSGLEA 120 RLHRRGGNDH SDGDDDEEEE SPSSSPNKAE AIAMAYKTLT DACPYLKFAH LTANQALLEA 180 TDGAPKIHIV DYGTMQGVQW AAFLQAFATW PAKNPSPRSL RITGIPSPHL GSNPAPAMLA 240 TQRRLTDFAK LLGVDFQFCP ILEPIRDFQP SQSLRTDPDE VVAVNFVLQL AQLPAPALKR 300 AFSLVQRLNP RIVTVAEYEA NNGASLRDQL ASNARFYSSV FESLDVALPG DDAQRITAER 360 LFFGREITKS LVEGTNCECP EKQREWQRCI DGAGLWSAAL SHYTVSQARL LLWLYNKSEN 420 FTLLQGPGSL SLGWLGTSIV TVSAWHC*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MSSSCCSSDQ QQWDISSFTT GPATTTTTTT TGGDEHLAAN PQHVSTTTVN LRSQHHQEQQ  60
QDRGGALEQL VQLLVSCLDD MESGQASSAM DKLATLKAMA SSSGNAVEKC AWYFSSGLEA  120
RLHRRGGNDH SDGDDDEEEE SPSSSPNKAE AIAMAYKTLT DACPYLKFAH LTANQALLEA  180
TDGAPKIHIV DYGTMQGVQW AAFLQAFATW PAKNPSPRSL RITGIPSPHL GSNPAPAMLA  240
TQRRLTDFAK LLGVDFQFCP ILEPIRDFQP SQSLRTDPDE VVAVNFVLQL AQLPAPALKR  300
AFSLVQRLNP RIVTVAEYEA NNGASLRDQL ASNARFYSSV FESLDVALPG DDAQRITAER  360
LFFGREITKS LVEGTNCECP EKQREWQRCI DGAGLWSAAL SHYTVSQARL LLWLYNKSEN  420
FTLLQGPGSL SLGWLGTSIV TVSAWHC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-91	70	446	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002985548.1	0.0	scarecrow-like protein 7
TrEMBL	D8SQ99	0.0	D8SQ99_SELML; GRAS family protein
STRING	EFJ13422	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6799	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	2e-83	GRAS family protein

Link Out ? help Back to Top
Phytozome	122435
Entrez Gene	9653062

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]