PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 121021 | ||||||||
Common Name | SELMODRAFT_121021, SELMODRAFT_123062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12682.4 Da PI: 10.4625 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.7e-08 | 16 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + k+Rt ++k++w ++ 121021 16 RRPFSVGEVESLVQAVEQLGTGRWRDVKLQAFenaKHRTYVDLKDKWKTL 65 568888999*****************8777778**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.221 | 11 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-5 | 15 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 16 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.46E-16 | 17 | 97 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.99E-15 | 17 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MRPKSHSLEI HKRRIRRPFS VGEVESLVQA VEQLGTGRWR DVKLQAFENA KHRTYVDLKD 60 KWKTLVHTAQ IAPHQRRGDP VPQELLDRVI AANNYWAAHQ AKEQAELEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-51 | 4 | 106 | 5 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002984862.2 | 7e-73 | telomere repeat-binding protein 5 isoform X2 | ||||
Refseq | XP_002985917.2 | 8e-73 | telomere repeat-binding protein 5 isoform X2 | ||||
Refseq | XP_024515463.1 | 2e-73 | telomere repeat-binding protein 5 isoform X3 | ||||
Refseq | XP_024545764.1 | 2e-73 | telomere repeat-binding protein 5 isoform X3 | ||||
Swissprot | Q6R0E3 | 3e-48 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | D8SN44 | 2e-74 | D8SN44_SELML; Uncharacterized protein | ||||
STRING | EFJ13094 | 3e-75 | (Selaginella moellendorffii) | ||||
STRING | EFJ14112 | 3e-75 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1391 | 12 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-50 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | 121021 |
Entrez Gene | 9640572 | 9645008 |
Publications ? help Back to Top | |||
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