PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 117274 | ||||||||
Common Name | SELMODRAFT_117274, SELMODRAFT_132659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 109aa MW: 12021.8 Da PI: 8.2202 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.1e-05 | 7 | 46 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++++ L++l+ + +K + a++L +A+ YIk L 117274 7 QVRKEKLGERISALQQLVSPF-----GKTDTASVLLEAIGYIKFL 46 567788999*********998.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.899 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-12 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-9 | 7 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-6 | 9 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
EMEMQMQVRK EKLGERISAL QQLVSPFGKT DTASVLLEAI GYIKFLHEQV QVLSSPYMKP 60 AGVSTTTRQT DRQDLRSRGL CLVPVSCTLQ VANDNGADYW APTLHGLK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024543734.1 | 2e-65 | uncharacterized protein LOC9661941 isoform X2 | ||||
Swissprot | Q7XJU1 | 5e-38 | BH154_ARATH; Transcription factor bHLH154 | ||||
Swissprot | Q9LT67 | 2e-37 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | D8SHL1 | 4e-75 | D8SHL1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ08037 | 7e-76 | (Selaginella moellendorffii) | ||||
STRING | EFJ16130 | 7e-76 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 117274 |
Entrez Gene | 9660002 | 9661941 |
Publications ? help Back to Top | |||
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