PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

113858

Common Name

SELMODRAFT_449730

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 475aa MW: 52062.7 Da PI: 8.4879

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
113858	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	383.4	2.7e-117	99	472	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfshltaN 99 lv+lL+ cA+av++++ + aq +Larl+++ p+g+pm+Rla+yfteALaar+ + ++s l+k l + + e++ +++ l a+++f++ Pi kf hlt N 113858 99 LVQLLVMCAHAVAEDNESIAQMILARLRQHTGPEGTPMERLASYFTEALAARIDHsTGSALFKGLLSDKLLESDgstQASMLEAFSTFYDYLPIGKFDHLTMN 201 689************************************************9978899999997766666664447777888888************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 q Il+ave+e+++Hi+D+++ G+QWpaLlqaLa+Rp+gpp++RiT+vgs s++ l +tg++L++ A++l+v++ +++l+ + ++++ +++pgEa 113858 202 QVILDAVERERAIHILDLQLWFGTQWPALLQALATRPGGPPRVRITAVGS----SADDLAATGDKLHECAKTLRVHLVYKALLLPKADKFHAGLVNLHPGEAF 300 **********************************************....9***********************99*************** PP GRAS 203 aVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 +Vn+ q h+ll+ s+s ++ ++ ++ l+Pkv+v++e++a+hns++Fl+rf e+l+yysa+fd++++ ++ + r k+Er + +++i+n++aceg + 113858 301 IVNSLSQFHYLLQPSTSDSDtSFGGFMAHIRALRPKVLVMAENDASHNSSDFLKRFGECLKYYSAVFDAMATC-ASSPSGRLKMERLFAAPKIRNIIACEGPN 402 ********8877777767889*****************************************999.455589******************* PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+erhe+++ W++rle aGF+p pls++a++qaklllr ++ +gy++++e+gslvlgW++ pL +vSaWr 113858 403 RVERHESMADWSKRLEVAGFRPSPLSQRAVNQAKLLLRLYYTNGYTLHSERGSLVLGWRNLPLNTVSAWR 472 *******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.828	73	452	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-115	99	472	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MPPPAPILPF RSHQDSFGTI RSFDFQQPIQ PAFASWTHGT WHVHPTVPPP LPPAVRGPAW 60 QHRGGIPHGT VPVPPAPAST VAVPGGIPHD GSQDPQVLLV QLLVMCAHAV AEDNESIAQM 120 ILARLRQHTG PEGTPMERLA SYFTEALAAR IDHSTGSALF KGLLSDKLLE SDGSTQASML 180 EAFSTFYDYL PIGKFDHLTM NQVILDAVER ERAIHILDLQ LWFGTQWPAL LQALATRPGG 240 PPRVRITAVG SSADDLAATG DKLHECAKTL RVHLVYKALL LPKADKFHAG LVNLHPGEAF 300 IVNSLSQFHY LLQPSTSDSD TSFGGFMAHI RALRPKVLVM AENDASHNSS DFLKRFGECL 360 KYYSAVFDAM ATCASSPSGR LKMERLFAAP KIRNIIACEG PNRVERHESM ADWSKRLEVA 420 GFRPSPLSQR AVNQAKLLLR LYYTNGYTLH SERGSLVLGW RNLPLNTVSA WRVA*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MPPPAPILPF RSHQDSFGTI RSFDFQQPIQ PAFASWTHGT WHVHPTVPPP LPPAVRGPAW  60
QHRGGIPHGT VPVPPAPAST VAVPGGIPHD GSQDPQVLLV QLLVMCAHAV AEDNESIAQM  120
ILARLRQHTG PEGTPMERLA SYFTEALAAR IDHSTGSALF KGLLSDKLLE SDGSTQASML  180
EAFSTFYDYL PIGKFDHLTM NQVILDAVER ERAIHILDLQ LWFGTQWPAL LQALATRPGG  240
PPRVRITAVG SSADDLAATG DKLHECAKTL RVHLVYKALL LPKADKFHAG LVNLHPGEAF  300
IVNSLSQFHY LLQPSTSDSD TSFGGFMAHI RALRPKVLVM AENDASHNSS DFLKRFGECL  360
KYYSAVFDAM ATCASSPSGR LKMERLFAAP KIRNIIACEG PNRVERHESM ADWSKRLEVA  420
GFRPSPLSQR AVNQAKLLLR LYYTNGYTLH SERGSLVLGW RNLPLNTVSA WRVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-65	106	471	26	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981009.1	0.0	DELLA protein RGL1
TrEMBL	D8SCH4	0.0	D8SCH4_SELML; GRAS family protein
STRING	EFJ17710	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5366	13	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-74	RGA-like 1

Link Out ? help Back to Top
Phytozome	113858
Entrez Gene	9657925

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]