PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 106490 | ||||||||
Common Name | SELMODRAFT_176081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 134aa MW: 15410.7 Da PI: 4.7974 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 62.4 | 9.4e-20 | 2 | 130 | 250 | 374 |
GRAS 250 sesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdg 348 s+ F +rf al++ + ++ +e+ l +e+ e+ +++++i++vva eg er+er +++++W +r ++aGF+ +p++ ++ + +k + + ++ 106490 2 SPFFIQRFEGALDTLFTRMELFETLLLQEDmPEEYDFMGNIIAKAIMDVVALEGVERIERPNSYRSWDSRARRAGFELLPVRPETIEVVKDVWCSSSsklNNN 104 5789*********9999999999888777775555555556*****************************************998887776543333124677 PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 +++ + ++l+lgWk+ ++++SaWr 106490 105 FKLGVDGHWLLLGWKESIVFAMSAWR 130 *************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.391 | 1 | 107 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-17 | 2 | 130 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
SSPFFIQRFE GALDTLFTRM ELFETLLLQE DMPEEYDFMG NIIAKAIMDV VALEGVERIE 60 RPNSYRSWDS RARRAGFELL PVRPETIEVV KDVWCSSSSK LNNNFKLGVD GHWLLLGWKE 120 SIVFAMSAWR TSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024537982.1 | 6e-87 | scarecrow-like protein 34 | ||||
TrEMBL | D8S1C1 | 6e-87 | D8S1C1_SELML; Uncharacterized protein | ||||
STRING | EFJ21821 | 9e-88 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 7e-23 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 106490 |
Entrez Gene | 9638660 |
Publications ? help Back to Top | |||
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