PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

106387

Common Name

SELMODRAFT_106387

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 295aa MW: 33987.3 Da PI: 7.5974

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
106387	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	176.5	2e-54	4	283	89	374
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 P l+ + aNq+Il+a g++rvHi+D++i +G QWp+L++aL++R+egpp ++iTg++ p+ +le+tg+rL ++Ae++g+++ef+ +++ ++e+ ++ 106387 4 PSLRATERFANQMILDACRGAKRVHIVDYGILYGDQWPSLIKALSERAEGPPLFKITGIDFPS---LVNLEKTGNRLVDYAESCGMHLEFHSIATAAWESAQP 103 677777889**************************************************65...899*******************98889999877 PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgr 292 + E l Vn++l++ ++ e++ ++s+r+ + + + s +P ++ + ad +s+ F +rf a + + a ++s+e+++ + + +++++ 106387 104 RYH--LFSELLFVNCQLRMRHIR-EDGIIDSPRKLFFEKILSFKPVMFFQSVVHADIGSPFFIHRFDGAWRSFLARLESFEETMKLGLidQSQLDFMDKFIEK 203 643..238*********96.9999************************************************88865544435555555555* PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ v+ac g++r+er ++++W + ++ F+++p+s++a + + ++ + ++ ++ ++++l+lgWkd L ++S+W+ 106387 204 CAMGVIACDGQNRVERISSYKTWDRLARKGQFGQLPVSKRALEMVMSVWSGHE--NFTYGMDENWLLLGWKDAVLNALSVWE 283 ****************************************99999999888..59**********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.388	1	265	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-52	4	283	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNLPSLRATE RFANQMILDA CRGAKRVHIV DYGILYGDQW PSLIKALSER AEGPPLFKIT 60 GIDFPSLVNL EKTGNRLVDY AESCGMHLEF HSIATAAWES AQPRYHLFSE LLFVNCQLRM 120 RHIREDGIID SPRKLFFEKI LSFKPVMFFQ SVVHADIGSP FFIHRFDGAW RSFLARLESF 180 EETMKLGLID QSQLDFMDKF IEKCAMGVIA CDGQNRVERI SSYKTWDRLA RKGQFGQLPV 240 SKRALEMVMS VWSGHENFTY GMDENWLLLG WKDAVLNALS VWEPIEKLPR FKHQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-20	13	282	97	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002977078.2	0.0	scarecrow-like protein 31
TrEMBL	D8S1C4	0.0	D8S1C4_SELML; Uncharacterized protein
STRING	EFJ21687	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	1e-49	GRAS family protein

Link Out ? help Back to Top
Phytozome	106387
Entrez Gene	9638662

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]