PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 104940
Common NameNAM1-1, SELMODRAFT_104940
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 191aa    MW: 21840.8 Da    PI: 10.4798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
104940genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54231631129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel.. 99 
             lppGfrFhPtd+el+++yL kkv ++k+ + ++i+evd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++v     +  +  
  104940  23 LPPGFRFHPTDNELITFYLVKKVVNTKFAA-HAIAEVDLNKFEPWDLPEKANMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKDRDVRGGggS--Nvn 122
             79*************************999.88***************99999***************************************998540..345 PP

     NAM 100 ...........vglkktLvfykgrapkgektdWvmheyrle 129
                        vg+kktLvfy+grap+gekt+Wvmheyrle
  104940 123 nsnsngpgtslVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 163
             55666777777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5719167IPR003441NAC domain
PROSITE profilePS5100554.09323190IPR003441NAC domain
PfamPF023653.1E-2824162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVVQQQQQQQ GSNRSRPPPN IWLPPGFRFH PTDNELITFY LVKKVVNTKF AAHAIAEVDL  60
NKFEPWDLPE KANMGEKEWY FFSLRDRKYP TGMRTNRATE AGYWKATGKD RDVRGGGGSN  120
VNNSNSNGPG TSLVGMKKTL VFYRGRAPRG EKTNWVMHEY RLEGKTAYLY GSRAAKVSNF  180
SRQYLMLCFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5191623142NO APICAL MERISTEM PROTEIN
1ut4_B3e-5191623142NO APICAL MERISTEM PROTEIN
1ut7_A3e-5191623142NO APICAL MERISTEM PROTEIN
1ut7_B3e-5191623142NO APICAL MERISTEM PROTEIN
3swm_A3e-51111628145NAC domain-containing protein 19
3swm_B3e-51111628145NAC domain-containing protein 19
3swm_C3e-51111628145NAC domain-containing protein 19
3swm_D3e-51111628145NAC domain-containing protein 19
3swp_A3e-51111628145NAC domain-containing protein 19
3swp_B3e-51111628145NAC domain-containing protein 19
3swp_C3e-51111628145NAC domain-containing protein 19
3swp_D3e-51111628145NAC domain-containing protein 19
4dul_A3e-5191623142NAC domain-containing protein 19
4dul_B3e-5191623142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17287247}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002976280.21e-130protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FRV46e-73NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBLD8RZ331e-141D8RZ33_SELML; Uncharacterized protein NAM1-1
STRINGEFJ225401e-141(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.12e-74NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Shinohara N,Ohbayashi I,Sugiyama M
    Involvement of rRNA biosynthesis in the regulation of CUC1 gene expression and pre-meristematic cell mound formation during shoot regeneration.
    Front Plant Sci, 2014. 5: p. 159
    [PMID:24808900]
  4. Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M
    The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development.
    Front Plant Sci, 2014. 5: p. 165
    [PMID:24817871]
  5. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  6. Cui X, et al.
    REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis.
    Nat. Genet., 2016. 48(6): p. 694-9
    [PMID:27111035]
  7. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  8. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  9. González-Carranza ZH, et al.
    HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression.
    PLoS ONE, 2017. 12(9): p. e0185106
    [PMID:28934292]