PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

102631

Common Name

SELMODRAFT_449722

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 416aa MW: 45427.8 Da PI: 6.0509

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
102631	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	391.1	1.3e-119	8	412	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn................sseelaalklfsevs 88 ++LlecA+av+ +dl a+alLa+l++ as +gd+mqRl+a+f+e+La+r+++ + + a++ + ++ + +++laa++++++vs 102631 8 LNVLLECAQAVHRQDLDSATALLAQLKHGASVYGDSMQRLTAHFAEGLATRILH-HRHSATAVQLLPPAKLDllhslilhrpaanpaaADDHLAAFTALYKVS 109 679***********************************************99.3333334444444433334467777777777777788888899* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl. 189 P++k++h+taNqaI+eav+g rvH+iD+di qG+QWp+++qaLasR++gpp l +Tg+gs s+e+l+ tg+rL++fA+ +gvpf+f++lv+ +le+l 102631 110 PFFKLAHFTANQAIVEAVAGRARVHVIDLDILQGFQWPSFIQALASRSGGPPsLLTLTGIGS----SAESLRDTGNRLSSFAAMFGVPFRFQPLVVGSLEELd 208 ********************************************99996789**....9***********************999999995 PP GRAS 190 ............eleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 e+e+++ ++ +Ea+aVn v+qlhrll+ + ++++ +++L +++++P v+vveqea hn+++F +rf+eal+yy+a+fdsl+a+lp+ 102631 209 lgarieprtghgEVEDMEEEEdeeEEAVAVNAVFQLHRLLNAPRESRK-LERFLAGLRRIRPAAVTVVEQEAAHNAPDFIARFVEALHYYAAVFDSLDASLPQ 310 5555555544445555555448889***********88888888.9************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaW 373 +eer+ +E+++++ +i+n+v+cegaer+erhe+++ W +++e+GF ++p+s++ ++qaklll+ ++ dgyrv e+ gs+ lgW++r L+++S W 102631 311 RDEERVRIEQVMFAAQIKNIVSCEGAERIERHEKMGFWAGKMGECGFAQAPMSSHSVSQAKLLLQLCPCDGYRVVESpcegwpVGSISLGWQQRLLLTASTW 412 ***********************************************************************9999899899999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.745	1	387	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-117	8	412	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
QALGLELLNV LLECAQAVHR QDLDSATALL AQLKHGASVY GDSMQRLTAH FAEGLATRIL 60 HHRHSATAVQ LLPPAKLDLL HSLILHRPAA NPAAADDHLA AFTALYKVSP FFKLAHFTAN 120 QAIVEAVAGR ARVHVIDLDI LQGFQWPSFI QALASRSGGP PSLLTLTGIG SSAESLRDTG 180 NRLSSFAAMF GVPFRFQPLV VGSLEELDLG ARIEPRTGHG EVEDMEEEED EEEEAVAVNA 240 VFQLHRLLNA PRESRKLERF LAGLRRIRPA AVTVVEQEAA HNAPDFIARF VEALHYYAAV 300 FDSLDASLPQ RDEERVRIEQ VMFAAQIKNI VSCEGAERIE RHEKMGFWAG KMGECGFAQA 360 PMSSHSVSQA KLLLQLCPCD GYRVVESPCE GWPVGSISLG WQQRLLLTAS TWGCA*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

QALGLELLNV LLECAQAVHR QDLDSATALL AQLKHGASVY GDSMQRLTAH FAEGLATRIL  60
HHRHSATAVQ LLPPAKLDLL HSLILHRPAA NPAAADDHLA AFTALYKVSP FFKLAHFTAN  120
QAIVEAVAGR ARVHVIDLDI LQGFQWPSFI QALASRSGGP PSLLTLTGIG SSAESLRDTG  180
NRLSSFAAMF GVPFRFQPLV VGSLEELDLG ARIEPRTGHG EVEDMEEEED EEEEAVAVNA  240
VFQLHRLLNA PRESRKLERF LAGLRRIRPA AVTVVEQEAA HNAPDFIARF VEALHYYAAV  300
FDSLDASLPQ RDEERVRIEQ VMFAAQIKNI VSCEGAERIE RHEKMGFWAG KMGECGFAQA  360
PMSSHSVSQA KLLLQLCPCD GYRVVESPCE GWPVGSISLG WQQRLLLTAS TWGCA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-77	13	412	25	378	Protein SCARECROW
5b3h_A	4e-77	13	412	24	377	Protein SCARECROW
5b3h_D	4e-77	13	412	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974950.1	0.0	DELLA protein RGL3
TrEMBL	D8RV93	0.0	D8RV93_SELML; GRAS family protein
STRING	EFJ23735	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5366	13	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-75	RGA-like 2

Link Out ? help Back to Top
Phytozome	102631
Entrez Gene	9637821

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]