PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00030409-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 22874.2 Da PI: 10.3192 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 5.1e-18 | 74 | 165 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl s+v ++l+lp +f++++++ + +++l++ d sgr+W+v++ ++ +++ + +t+GW++F+++ Lk g+f+vF+l + SMil_00030409-RA_Salv 74 FFKVL--SNVDYIKLLRLPPHFLRKYELTLPANVKLRVDD-SGRRWNVRV--ERMDDGlFCFTNGWEKFAEDAALKFGEFLVFSLLAK 156 99***..556666669**********98877777777555.*********..7777777*************************9874 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 se l+v +++ SMil_00030409-RA_Salv 157 SE--LKVDIYE 165 44..5888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-22 | 68 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-22 | 69 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.704 | 72 | 167 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.17E-18 | 72 | 164 | No hit | No description |
Pfam | PF02362 | 2.2E-15 | 74 | 165 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.7E-17 | 74 | 167 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MALGIHASAR PFKSLHPSPT THHSFSYNSH FSLKPKAQRQ QPPTSSPATA KKVLEEEKKS 60 PNPMSGRSNE TPSFFKVLSN VDYIKLLRLP PHFLRKYELT LPANVKLRVD DSGRRWNVRV 120 ERMDDGLFCF TNGWEKFAED AALKFGEFLV FSLLAKSELK VDIYETSCCK REIPLLQLNA 180 QDADESGVKR GIRVRPSSGK RG |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-14 | B3 family protein |