PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030357-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 297aa    MW: 33869.9 Da    PI: 6.939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030357-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  SMil_00030357-RA_Salv 14 RGLWSPEEDEKLIRYITTHGCGCWSEVPQKAGLQRCGKSCRLRWINYL 61
                           788*******************************************97 PP
2Myb_DNA-binding54.72.3e-1767111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rgr+T+eE++l+++++   G++ W+ Ia++++ gRt++++k++w+++
  SMil_00030357-RA_Salv  67 RGRFTPEEEKLIINLHGAVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                            89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.063961IPR017930Myb domain
SuperFamilySSF466894.12E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-121363IPR001005SANT/Myb domain
PfamPF002496.4E-161461IPR001005SANT/Myb domain
CDDcd001673.85E-111761No hitNo description
PROSITE profilePS5129425.61562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2565116IPR009057Homeodomain-like
SMARTSM007177.0E-1766114IPR001005SANT/Myb domain
PfamPF002496.7E-1667111IPR001005SANT/Myb domain
CDDcd001676.76E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGCGCWSEV PQKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIN LHGAVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
TTSSNNTKIN TNQDSHFTSA QDFFNRNLST KSPVQDTLFP LTFMFDIGPT TTTTTEGLGV  180
TDNTRIDHIN FHENAGILMN QETWQMNQHQ HHQSEMLQFT PLMENLENIM LPIDVQNGGG  240
GQISEADCLQ QRNEMNEWIE AQNSCSSYFL WDQAQGNVGG DASSNMATLL SSFPSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074190.11e-136transcription repressor MYB6
TrEMBLA0A2G9HK991e-133A0A2G9HK99_9LAMI; Transcription factor, Myb superfamily
STRINGcassava4.1_030636m1e-118(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-85myb domain protein 103