PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00030244-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 314aa    MW: 33341.1 Da    PI: 4.1196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00030244-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17147189347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T eEde++++a+++ G++ W+tIar ++ gRt++ +k++w++ 
  SMil_00030244-RA_Salv 147 PFTLEEDEIILKAHEEIGNK-WATIARLLN-GRTDNAIKNHWNST 189
                            89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.938120139IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-10122152IPR009057Homeodomain-like
SuperFamilySSF466892.09E-24123197IPR009057Homeodomain-like
PROSITE profilePS5129422.647140194IPR017930Myb domain
SMARTSM007171.4E-14144192IPR001005SANT/Myb domain
PfamPF002491.4E-14147189IPR001005SANT/Myb domain
CDDcd001679.78E-12147190No hitNo description
Gene3DG3DSA:1.10.10.601.3E-19153191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKGGISGISS SRGKILRVFG DPSERGDLSG TDDFSGMKDF SDVDDFSGVE DFSDNGDFSE  60
GDDFSDDGDF SDGDDFSDDG DFSDGDDFFG ECISSAIFVP PDQGALESGR GQPPAGTGAA  120
ARRQGRSGKS CRLRWCNQLS PEVEHRPFTL EEDEIILKAH EEIGNKWATI ARLLNGRTDN  180
AIKNHWNSTL KRRFSADSSG GGEEHLSQVL RRADSGDIST AMMNGLKLSP LERSSRSDSD  240
ISDSGYNAEL SFPIATNAVV VPREESPPAA AGIEDCDGEF TALTLCLLGI GSVSPANGIG  300
KTETKEIGGE GLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-2611319424105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-2611319424105C-Myb DNA-Binding Domain
1msf_C7e-2611319424105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551750.11e-71transcription factor MYB44-like
TrEMBLA0A0K1SBK43e-61A0A0K1SBK4_REHGL; R2R3-MYB protein
STRINGMigut.B00390.1.p2e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1686025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-39myb domain protein r1