PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029631-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 391aa    MW: 41724.8 Da    PI: 7.9998
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029631-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.31.2e-3342113273
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                            ++k+++++++hTkv+gR+ R+R++a+caar+F+L++eLG+++ ++ti WLl++a+pai+++tgt++ +a ++
  SMil_00029631-RA_Salv  42 PVKRSSTKDRHTKVEGRGHRIRIPATCAARVFQLTRELGHKSGGETIRWLLEKAEPAIIAATGTGTVPAIAM 113
                            689*************************************************************88888444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-2747129IPR005333Transcription factor, TCP
PROSITE profilePS5136924.74848102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLNISLTTVS KAQPLRVVMK EEQPHTADEK PAPPPLVVSQ PPVKRSSTKD RHTKVEGRGH  60
RIRIPATCAA RVFQLTRELG HKSGGETIRW LLEKAEPAII AATGTGTVPA IAMSVNGTLK  120
IPTKGKMASG SGDRQEQIGA ATLAARAGAV ALDWSPEFGQ NGGGRFVEAL CAAVGVDGRD  180
GRGSSSSAAA GGSVSVDGRR YNNSAVTGAF AGVNGRTTEN FHEGGTKGEK VAWGIGQREE  240
KEWESVKGRQ EAHDLEQTPS TTVQSPPPQP ISPPPLVSEV NTPELTTEIY GFTDHMSQDV  300
ERNQGENQCL VERDHEENTA NEGTKGYVLP PRSTRGIPPK RYTPEKVGKN SRYAIGNVAK  360
GNISKTAAAY EAALYDEEFL NIVLVFLVIS C
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-46TCP family protein