PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029472-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31484.8 Da    PI: 4.268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029472-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-2069122356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++t+eq++ Le+ Fe ++++  e++++LAkkl+L+ rqV vWFqNrRa++k
  SMil_00029472-RA_Salv  69 KKRRLTPEQVHMLEKSFEAENKLEPERKTQLAKKLNLQPRQVAVWFQNRRARWK 122
                            5678*************************************************9 PP
2HD-ZIP_I/II132.51.5e-4268159192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqv++LE+sFe+e+kLeperK++la++L+lqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l  + +++ ke+++L+
  SMil_00029472-RA_Salv  68 EKKRRLTPEQVHMLEKSFEAENKLEPERKTQLAKKLNLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLCNYDSILKENDKLK 155
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            +el 
  SMil_00029472-RA_Salv 156 SELL 159
                            9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-2062126IPR009057Homeodomain-like
PROSITE profilePS5007117.94564124IPR001356Homeobox domain
SMARTSM003898.9E-2067128IPR001356Homeobox domain
CDDcd000869.49E-1969125No hitNo description
PfamPF000465.5E-1869122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-2170131IPR009057Homeodomain-like
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PfamPF021836.1E-16124166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
LRKEMESGRI FFEPSCQNNM LFLGNADSGF RVGGRTVINM EESSKRRPFF SSAEELYDED  60
YFDEQLPEKK RRLTPEQVHM LEKSFEAENK LEPERKTQLA KKLNLQPRQV AVWFQNRRAR  120
WKTKQLERDY DQLKSSYDSL LCNYDSILKE NDKLKSELLS LTEKLQPEET AGELSQKPDP  180
VAAADTVQPC LELTVKVEDR LSTGSDGSAV VDDDGRQLLD SGDSYFPDND YPDCMAAVDG  240
INSEEDDGSD DGRSYFTDVF AVAEQQEPIG WCIWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849408.11e-158PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022832e-93HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A4D9BA501e-177A0A4D9BA50_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H00128.1.p1e-157(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-76homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]