PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00029285-RA_Salv
Common NameWRKY43
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 176aa    MW: 19730.8 Da    PI: 5.6453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00029285-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31113171159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp +v++tYeg Hnh+
  SMil_00029285-RA_Salv 113 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNEDPLYVVTTYEGIHNHK 171
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-3399173IPR003657WRKY domain
SuperFamilySSF1182902.09E-28106173IPR003657WRKY domain
PROSITE profilePS5081130.71108173IPR003657WRKY domain
SMARTSM007745.4E-37113172IPR003657WRKY domain
PfamPF031068.7E-25114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDAPLMIMAD DHSYPIKPGS SLGQAHEPGF EVSDFFEFND WIEEAPSFSS PLSAASYDSQ  60
NPSYTPNAGS SWSSSSSSSS FLEGAITRDS GCGREKEMRE KVAFKTKSEV EVLDDGFKWR  120
KYGKKMVKNS PNPRNYYRCS VEGCPVKKRV ERDNEDPLYV VTTYEGIHNH KGPHQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25103173777Probable WRKY transcription factor 4
2lex_A1e-25103173777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231660.0KM823166.1 Salvia miltiorrhiza WRKY protein (WRKY43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100937.12e-73probable WRKY transcription factor 50
TrEMBLA0A0D5Y9A91e-117A0A0D5Y9A9_SALMI; WRKY protein
STRINGMigut.E01579.1.p3e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-42WRKY DNA-binding protein 50