PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00029259-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 27415.3 Da PI: 4.7253 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ F+ ++++ +++ eLAkklgL+ rqV +WFqNrRa+ k SMil_00029259-RA_Salv 70 KKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSK 123 56789***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 124.6 | 4.4e-40 | 69 | 157 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl++eqv++LE+sF e+kLep+rK+ela++Lglqprqva+WFqnrRAR ktk lE++y +Lk++yd+lk++ ++L +++e+L+ SMil_00029259-RA_Salv 69 EKKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSKTKVLEREYGSLKSCYDKLKADYDTLFSDNEKLK 156 69*************************************************************************************9 PP HD-ZIP_I/II 89 e 89 + SMil_00029259-RA_Salv 157 N 157 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.78E-19 | 54 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 68 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 70 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-16 | 70 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 71 | 131 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.6E-6 | 96 | 105 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-6 | 105 | 121 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.9E-12 | 125 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKSSPVFDVA DALLNDERIP SDALWIPNSS PSLHAMVSFE QSRGERSNRS RQSDCDDGDS 60 DSCFHHPPEK KRRLTAEQVQ FLEKSFAVEN KLEPDRKNEL AKKLGLQPRQ VAIWFQNRRA 120 RSKTKVLERE YGSLKSCYDK LKADYDTLFS DNEKLKNEKG NDEISPLDAA PCKQEDASSY 180 SSHVLEASDF EQGDEDDECL VQRLCLPKLE AEYYDDHLQP NSCNLGFPVQ NQGTWFWQC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071034.1 | 1e-80 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A4D9APJ0 | 1e-125 | A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.L01347.1.p | 3e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-40 | homeobox 1 |