PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00028452-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 279aa MW: 31071.1 Da PI: 9.114 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 4.8e-30 | 141 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++v+ tYegeHnh+ SMil_00028452-RA_Salv 141 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSIVIATYEGEHNHP 200 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-30 | 128 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.9 | 136 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-25 | 137 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-33 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-24 | 142 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
LLKLVLSSLQ EEAMEFSSLL DTSLNLNAKP PPLPPPPPKQ EGESQSFMAF GRNEERGALV 60 EEINRMSAEN KKLTEMLSMM CENYSGLRNQ LAEYRSKKRK SNDNVESSSS DEDSSNKTLI 120 KPNIISHSHV RTQASDTSLI VKDGYQWRKY GQKVTRDNPS PRAYFKCSFA PTCPVKKKVQ 180 RSVEDQSIVI ATYEGEHNHP HPSKVEAPPN RSSPSLSPLA PRITLDLTNS TPSSDDLRGK 240 AQVQHCLVEQ MASTLTKDPT FKAALAAAIS GKFLQQNKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 140 | 202 | 13 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823132 | 0.0 | KM823132.1 Salvia miltiorrhiza WRKY protein (WRKY9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022842669.1 | 1e-102 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-78 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2U5HNZ2 | 1e-177 | A0A2U5HNZ2_SALMI; WRKY transcription factor 2 | ||||
STRING | cassava4.1_012109m | 3e-95 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4500 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-74 | WRKY DNA-binding protein 40 |