PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027448-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 680aa    MW: 75882.4 Da    PI: 7.9738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027448-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-10223261948
                            HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            d+ l +av+ + g++Wk+Ia+ ++ +R++ qc +rwqk+l
  SMil_00027448-RA_Salv 223 DDTLRKAVAAFRGKSWKKIAEFFP-HRSEVQCLHRWQKVL 261
                            6789********************.************986 PP
2Myb_DNA-binding61.51.8e-19267313148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT+eEde++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  SMil_00027448-RA_Salv 267 KGPWTPEEDEKITKLVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 313
                            79******************************.*************97 PP
3Myb_DNA-binding49.41e-15319362146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +++WT eE++ l++a++  G++ W+  a+ ++ gRt++ +k++w++
  SMil_00027448-RA_Salv 319 KDAWTLEEELTLLNAHRINGNK-WAELAKLLP-GRTDNAIKNHWNS 362
                            679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2E-6177263IPR001005SANT/Myb domain
PROSITE profilePS512947.086214261IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-13223271IPR009057Homeodomain-like
SuperFamilySSF466891.0E-9223271IPR009057Homeodomain-like
PfamPF002493.9E-9223261IPR001005SANT/Myb domain
CDDcd001676.17E-8223261No hitNo description
PROSITE profilePS5129431.844262317IPR017930Myb domain
SuperFamilySSF466891.2E-30264360IPR009057Homeodomain-like
SMARTSM007171.9E-18266315IPR001005SANT/Myb domain
PfamPF002491.8E-18267313IPR001005SANT/Myb domain
CDDcd001671.43E-16269313No hitNo description
Gene3DG3DSA:1.10.10.602.6E-28272321IPR009057Homeodomain-like
SMARTSM007171.6E-14318366IPR001005SANT/Myb domain
PROSITE profilePS5129420.548318368IPR017930Myb domain
PfamPF002496.1E-14319362IPR001005SANT/Myb domain
CDDcd001677.09E-11321364No hitNo description
Gene3DG3DSA:1.10.10.603.7E-21322368IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDPGQDSRPC ESNGSGHESR FFGPNGFGPD PDLIDDHEIE RVRADKVRRK VPFEVQTFAP  60
NGHVQPSFAV KQFLVFPRPR THGSQTAPSL ASPVINRRFM RGFDLSSYDV LGSEFCAGLM  120
AEVKLDEFCL ENKESAVASS SSVSENSSST ALKSPGVTSP RSVSPAHRRT TGPIRRAKGG  180
WTPEEVRTIP KECMYHVLEL MNFVLDLTLM LHDDKSTTGV QVDDTLRKAV AAFRGKSWKK  240
IAEFFPHRSE VQCLHRWQKV LNPELVKGPW TPEEDEKITK LVAKYGPTKW SVIAKSLPGR  300
IGKQCRERWH NHLNPDIKKD AWTLEEELTL LNAHRINGNK WAELAKLLPG RTDNAIKNHW  360
NSSLKKKLDF YLATGSLPPV AKNVLLNGAR DIGRSTLVGS PFLALCDTTD LCKVEDGKDK  420
LDAITADHDV AAYQQSESRN PECTNCLAMP SEAVINRSNT ESEFERHRIC GEVDQYRIIG  480
AAVHCDSPIY GTLYYEPPVL DSQEQLGSNI GNNFSMQSES DISATALSPT PFITPPSVNS  540
RSLYTQTPES ILKIAAKSFP ITPSILRKRK SEQQQPKETV LSNSEHDQTN SSENTGLQNN  600
SLCENPTCNN EDGLSSNKSF NSSPPYRLRS KRTSVLKSVE KQLDFTTAME QDFLDNNPKD  660
GEVKKVPPVT KFVYTRQRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-672103681159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-672103681159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.10.0transcription factor MYB3R-3-like isoform X2
TrEMBLA0A4D9B7Q00.0A0A4D9B7Q0_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.L01945.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-131myb domain protein 3r-5