PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00027348-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HSF

Protein Properties

Length: 187aa MW: 21663.1 Da PI: 10.4764

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00027348-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.1	6.8e-34	20	110	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++l+ ++++++sw+++gn fvv+ + ef+k +LpkyFkh+nf+SFvRQLn+YgFkk+ +++ weFkh++F kg SMil_00027348-RA_Salv 20 FLSKTYDLLNA-AVERVVSWNSDGNGFVVWSPAEFSKLMLPKYFKHNNFSSFVRQLNTYGFKKTASKR---------WEFKHEKFLKG 97 9*****986.899*********************************************9988.........******* PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +k+ll +i rkk SMil_00027348-RA_Salv 98 SKHLLVEISRKKV 110 *********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.4E-35	13	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.8E-43	16	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.07E-28	17	108	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.0E-30	20	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-11	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-11	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.7E-11	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGAGGRVGSK PHKMKCPAPF LSKTYDLLNA AVERVVSWNS DGNGFVVWSP AEFSKLMLPK 60 YFKHNNFSSF VRQLNTYGFK KTASKRWEFK HEKFLKGSKH LLVEISRKKV EPSAFPQFLE 120 ASRGRCEDGK MARMIMEENQ NLRRERVELK MQISHFKAVE MRLLECLSHY ITHQNNMEGP 180 TIQNFSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-18	20	108	29	129	Heat shock factor protein 1
5d5v_B	1e-18	20	108	29	129	Heat shock factor protein 1
5d5v_D	1e-18	20	108	29	129	Heat shock factor protein 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022845640.1	6e-78	heat stress transcription factor B-2a-like isoform X1
TrEMBL	A0A4D8YDX8	5e-95	A0A4D8YDX8_SALSN; Heat shock transcription factor, other eukaryote
STRING	POPTR_0004s04260.1	1e-74	(Populus trichocarpa)
STRING	AES84527	1e-74	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10707	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-42	heat shock transcription factor B2A