PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00027340-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19959 Da PI: 9.2717 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.9e-10 | 14 | 68 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ + +E++RR++++ + +L +l+P+ + + p + +s + Le A++YIk+ q SMil_00027340-RA_Salv 14 RADRKTIEKNRRNEMKALYTNLNSLIPPqPHSRPREMVSLPDQLEAATNYIKMQQ 68 677889**********************665777777***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.953 | 12 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-10 | 14 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 14 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-6 | 14 | 72 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-8 | 14 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
LHLEMDHQNP SCSRADRKTI EKNRRNEMKA LYTNLNSLIP PQPHSRPREM VSLPDQLEAA 60 TNYIKMQQAK LEKLKQKKNC LVWSKGGPNN LPNIDFRVSG SALEVVLITG LNCQFMFTRI 120 IHLLHEEAAE VVAATFSVLD NTVFHTIHAK IGDQSAQNHG AARISERLKK FAYDCI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257544 | 0.0 | KP257544.1 Salvia miltiorrhiza clone 112 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096311.1 | 1e-69 | transcription factor bHLH125 | ||||
TrEMBL | A0A0H3YBW0 | 1e-127 | A0A0H3YBW0_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_002509465.1 | 4e-59 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5105 | 21 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-26 | bHLH family protein |