PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00027296-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 760aa    MW: 83854 Da    PI: 8.6248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00027296-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-08660709147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  SMil_00027296-RA_Salv 660 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 709
                            679***********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.12E-7461547IPR029071Ubiquitin-related domain
PROSITE profilePS500539.33467537IPR000626Ubiquitin domain
PROSITE profilePS5129415.578655714IPR017930Myb domain
SMARTSM007179.5E-8659712IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10660710IPR009057Homeodomain-like
SuperFamilySSF466899.4E-16661742IPR009057Homeodomain-like
CDDcd116601.57E-17661711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MWRGGVTTGF TSHLHVASSN ATYGPQENRS SGSSLRCRNI FHWILLAEEN DVAIEDNSWW  60
HGRDFDSLKK RLEYGFNGYQ VPPTPRAARS VRRRSLFKRK ADDNQMCAFD LLATVAGKLL  120
LDGESLPSAN TNAGKEQPPT LGNSVGKEDK GENKPLEEKS CDRDCYERNF LFTEIVSEAP  180
NPNLCSNELA CPQNDIISRP ASGITSSDCS EKFGSAEQLV NDDCKLSLGI STPSVDTESS  240
GLRLSANSGS EDESRKGRKD IKLDSANIRN LSISNKVSLG SSVRPEASDR KSSALVCSVD  300
SVKFPFCRDR TSCGPFPVNR ENVKLVTRDD DDNSSECIEP SARNKAFKQP GDRRFRKFLA  360
PKHCKITSNV KDDEGCNAER CNYLNRKNGL KRQRSLRDYP FKKRKLYDCS SVSNSDESIT  420
GDGMFGVSEN GANEDGLRSG PTLPGANAAP TSVAGGYDSF HSKNSQVKLR IKSFRVPELF  480
IEIPETATVG SLKRMVMEAV NTVLGGGLRV GVVLQGKKIR DDNKTLLQTG ISHENKMDTL  540
GFTLEASPAP APIRSYPEDC QGQLLCDNPQ PLARYPPTPT ITQSAGQLGN QDTHPDLHGS  600
FNNFIESDHD SAPSPPGMSL QRATSESKAL VPLPSAKQDA LAVVPLRKSK RSESTQRRIR  660
RPFTVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTAGISPQQR  720
RGEPVPQELL DRVLTAHAYW SQQQPKQQQL KSQPDTCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-556477484105Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390405KRQRSLRDYPFKKRKL
2395404LRDYPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.10.0telomere repeat-binding protein 2
RefseqXP_011089488.10.0telomere repeat-binding protein 2
TrEMBLA0A4D9BW660.0A0A4D9BW66_SALSN; Uncharacterized protein
STRINGMigut.D02080.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-123TRF-like 2