PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026827-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YB | ||||||||
Protein Properties | Length: 173aa MW: 18712.8 Da PI: 10.5797 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 55.8 | 1.1e-17 | 10 | 104 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvq.ecvsefisfvts...easdkcqrekr.ktingddllwalatlGfedyveplk 84 reqdrflPianvsrimkk ++ kis+ + + c s s ++ as +++ +r ++ gdd +lGfe+yv+plk SMil_00026827-RA_Salv 10 REQDRFLPIANVSRIMKKRSTGERKISRTPRRRCRsACRSSSASSPAKppiSASVRTEDHQRrRSSLGDD------NLGFENYVDPLK 91 89*************************9988766526877777665542225666666554404445555......79********** PP NF-YB 85 vylkkyrelegek 97 +yl+k+r++e+ek SMil_00026827-RA_Salv 92 LYLQKFRDVEEEK 104 **********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.9E-7 | 8 | 47 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.3E-6 | 80 | 116 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSRGIIGTPR EQDRFLPIAN VSRIMKKRST GERKISRTPR RRCRSACRSS SASSPAKPPI 60 SASVRTEDHQ RRRSSLGDDN LGFENYVDPL KLYLQKFRDV EEEKTVMAGR RDKDSGGDGD 120 GDADAGFYGL NVMGHQGGPV YGSYHVGATS GAAAARRGGG AGRSSRLGSF TCD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9BZK5 | 6e-28 | A0A4D9BZK5_SALSN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 4e-15 | nuclear factor Y, subunit B2 |