PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00026667-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27385.2 Da PI: 4.3407 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.4e-19 | 52 | 105 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k SMil_00026667-RA_Salv 52 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 105 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130 | 9.2e-42 | 51 | 142 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++yd lk + erL++++e+L SMil_00026667-RA_Salv 51 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGGLKASYDGLKLNFERLQRDNESLL 138 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +el+ SMil_00026667-RA_Salv 139 KELN 142 9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.68E-19 | 45 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 47 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-18 | 50 | 111 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-16 | 52 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.71E-16 | 52 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 54 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.7E-6 | 78 | 87 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.7E-6 | 87 | 103 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-14 | 107 | 142 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKRLSNSDSL GGLMSICPNA TEEESNNPMY AREFQTMLEG LEEEESGHVS EKKRRLSVDQ 60 VKALEKNFEV ENKLEPERKV KLAQELGLQP RQVAVWFQNR RARWKTKQLE RDYGGLKASY 120 DGLKLNFERL QRDNESLLKE LNGDDEEKTR LESEIGGAEA EMENPEGGKK EEASWPKFGD 180 GSSDSDSSAI LNEENIGFQL GAPQLVKIEE HNFFGEESCS TLFSDDQPPS LPWYCNDQWD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00271 | DAP | Transfer from AT2G22430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097532.1 | 1e-104 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | P46668 | 3e-70 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A4D9AYZ9 | 1e-104 | A0A4D9AYZ9_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.L00161.1.p | 1e-101 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-71 | homeobox protein 6 |
Publications ? help Back to Top | |||
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