PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00026183-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 21034.9 Da PI: 9.5655 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 202 | 2.5e-62 | 2 | 158 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 + seq y+ CnfCn +lavsvP +sl+ vvtvrCGhC++l +vn+a + + ++++ ++ ++ + ++++++ ++ k + + SMil_00026183-RA_Salv 2 DVSEQFRYIPCNFCNIVLAVSVPCSSLLDVVTVRCGHCSNLWTVNMA--AAAFPSMQP------PSSCQDFQATNSSTTPTEYKVDLS 81 5799**************************************96655..556666664......556667777777776666666666 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+ ++k ++ + + p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl SMil_00026183-RA_Salv 82 SSSKWNYK-TQPSISKKPEPRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 158 66666655.33334444555569*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.4E-67 | 4 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-8 | 96 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.0E-4 | 112 | 150 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MDVSEQFRYI PCNFCNIVLA VSVPCSSLLD VVTVRCGHCS NLWTVNMAAA AFPSMQPPSS 60 CQDFQATNSS TTPTEYKVDL SSSSKWNYKT QPSISKKPEP RIVNRPPEKR QRVPSAYNQF 120 IKEEIQRIKA NNPEISHREA FSTAAKNWAH FPHIHFGLML ETNSQPKLNE GPEKHQFRRA 180 AIRNK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078402.1 | 9e-96 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 9e-75 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A4D9AY68 | 1e-114 | A0A4D9AY68_SALSN; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 3e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-77 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|