PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026151-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 274aa    MW: 30443.5 Da    PI: 7.6956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026151-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0953104154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            +++ah+ +E++RR+++   ++ Lr+llP       ++K   ++   +Av+Y++++
  SMil_00026151-RA_Salv  53 KKTAHKFIEKQRRQEMTALYASLRSLLPLqY---VKGKRAVSDHMHQAVNYVNDM 104
                            799**************************66...9999999**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-949121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1149119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-750109No hitNo description
PROSITE profilePS5088811.47752104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-653104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFPISSDGVS EDPSIFLELE DLLADCPIPQ GNQNTEKKRP RKFASTRSQD DSKKTAHKFI  60
EKQRRQEMTA LYASLRSLLP LQYVKGKRAV SDHMHQAVNY VNDMKMNIEQ LQKRRDKLRN  120
ITTSAAADDD GDPNTTVNGH DCVKITLFRD GIEILITHSP NDNIFPLSKV LADLLDRQLN  180
VVHCVSTTTS HSTFLQTIHI EVATENVAVP AGFERERGAT SGSAAQPLFP GEEGHRRPPL  240
FPLSPKLGAA SLKSPPPSEP ETLRYRLPQI AASL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575320.0KP257532.1 Salvia miltiorrhiza clone 99 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076269.11e-59transcription factor bHLH36-like
TrEMBLA0A0H3YB580.0A0A0H3YB58_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009624565.12e-38(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.15e-23bHLH family protein