PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00026017-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 674aa    MW: 73464.4 Da    PI: 6.8463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00026017-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07275295526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  SMil_00026017-RA_Salv 275 PCPDFRK-GACRRGDMCEYAHG 295
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.15E-167139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1710144IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-1053128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.40459166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.355989IPR002110Ankyrin repeat
CDDcd002045.31E-1462139No hitNo description
PROSITE profilePS5008812.36994129IPR002110Ankyrin repeat
SMARTSM002485.1E-494126IPR002110Ankyrin repeat
SMARTSM002482400130163IPR002110Ankyrin repeat
SMARTSM003564.0E-6270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4274297IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035631305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MSVSFLNVET EDTLTSLLEH AANNDLEGFK KYIGREPSSI DEVGLWYGRQ NGSSQMVLQH  60
LTPLMVAATY GSIDVLKVIV SLPEVDVNRN CGVDNSTALH CAASGGSVNA VDAVKLLLAA  120
GADPNLTDAN GRRPLDVVVV SPKSQGTKYS IQMMLTMGTS FEEEHHLRVL IGASSLDSPP  180
LSPSCANGSP HSPEGIKFND LLASPAPEKK EYPVDPSLPD IKNSIYSTDE FRMFSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRL CKDGTSCNRR VCFFAHTHEE LRPLYVSTGS AVPSPRSNAS AANAMDFAAA  360
MSLLPGSPSS VPVMSPSPFT PPMSPSANGI SNPSWPSQQN VPALHLPGSN FQSSRLRSSL  420
HARDIPFDDM NVFGDIDLQQ QQQLLNELPH LSQPSISTNM LNRSVRPKTL TPSNLEDIFS  480
AESSSPRYSD QTLASAVFSP THKSAVLNQF QQQQQSMLSP IKTTFSPRNA DHTLLQAPFG  540
VPSSGRMSPR SLEPISPMSA RISMLARQEK QHQQFRSLSS RDLGSNAAAA VASMEGNWSK  600
WGSPNGQPEW GVNADDFGKL KRSSSFELLN NGEEPDLSWV HSLVKESPQD MKEKSAPRVS  660
GATGTATSSG EGGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075220.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A4D9B8Z00.0A0A4D9B8Z0_SALSN; Uncharacterized protein
STRINGEMJ058250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]