PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025758-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 540aa MW: 60043.7 Da PI: 4.645

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025758-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.9	1e-32	7	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrFhPt + + +k +++ + + + +++ P ++ k+k+++ ewyfFs dkky +g r+nrat++gyWk+tg SMil_00025758-RA_Salv 7 PGFRFHPTMRNWCSIICGEKPAENFADS-TLLLMSMSTRSSPGIFHVymsKLKTRDLEWYFFSFLDKKYGNGARTNRATEKGYWKTTG 93 9*****99999776666666665555.5555556677788877633346666778*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++v++ k++ vg+kktLv++ grapkg++++Wvmheyrl SMil_00025758-RA_Salv 94 KDRPVYH-KRQIVGMKKTLVYHCGRAPKGQRSNWVMHEYRL 133 ***.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-38	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	39.456	5	156	IPR003441	NAC domain
Pfam	PF02365	2.6E-17	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MSNMLGPGFR FHPTMRNWCS IICGEKPAEN FADSTLLLMS MSTRSSPGIF HVYMSKLKTR 60 DLEWYFFSFL DKKYGNGART NRATEKGYWK TTGKDRPVYH KRQIVGMKKT LVYHCGRAPK 120 GQRSNWVMHE YRLAGSELEN AGAAKDAFVV CRIFQKSGSG PKNGEQYGAP FVEEEWDDDE 180 LVSVPQDDAR QEIDFGDNAY LNCDDLQQIL GSDVPLNITP VSSDGSHDGE ATNTFGGTQN 240 PFEFAGDGYG ESKMCYDPNI QNLPAKQEGL GACSKSGNSE FADDLSLFLN EPFLDSFENF 300 PNADEGFIEA NDLSNPYETN TSTFDMLAEY LDASDDNSSL YFSSDPAMIF GNEDLASNQT 360 LLPQMNVGNE TEKAILPSGQ LIDNNNFDAA FSPNKHTSTE YQSDIQYPYI KQASRMLGNI 420 HAPPAYAAEF PSKDAIRRLN FVTRSPSSVE LSASTIRIRN LNTCGKGTDQ SSGKHEDFNI 480 VLSFGFSRGD DGSSSLESSV RIVPGKADSA ISRGWLCFIF FWILIFSMMS FRFGNYIGVK

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MSNMLGPGFR FHPTMRNWCS IICGEKPAEN FADSTLLLMS MSTRSSPGIF HVYMSKLKTR  60
DLEWYFFSFL DKKYGNGART NRATEKGYWK TTGKDRPVYH KRQIVGMKKT LVYHCGRAPK  120
GQRSNWVMHE YRLAGSELEN AGAAKDAFVV CRIFQKSGSG PKNGEQYGAP FVEEEWDDDE  180
LVSVPQDDAR QEIDFGDNAY LNCDDLQQIL GSDVPLNITP VSSDGSHDGE ATNTFGGTQN  240
PFEFAGDGYG ESKMCYDPNI QNLPAKQEGL GACSKSGNSE FADDLSLFLN EPFLDSFENF  300
PNADEGFIEA NDLSNPYETN TSTFDMLAEY LDASDDNSSL YFSSDPAMIF GNEDLASNQT  360
LLPQMNVGNE TEKAILPSGQ LIDNNNFDAA FSPNKHTSTE YQSDIQYPYI KQASRMLGNI  420
HAPPAYAAEF PSKDAIRRLN FVTRSPSSVE LSASTIRIRN LNTCGKGTDQ SSGKHEDFNI  480
VLSFGFSRGD DGSSSLESSV RIVPGKADSA ISRGWLCFIF FWILIFSMMS FRFGNYIGVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	5	162	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	5	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	5	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	5	162	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	5	162	20	174	NAC domain-containing protein 19
3swm_B	1e-29	5	162	20	174	NAC domain-containing protein 19
3swm_C	1e-29	5	162	20	174	NAC domain-containing protein 19
3swm_D	1e-29	5	162	20	174	NAC domain-containing protein 19
3swp_A	1e-29	5	162	20	174	NAC domain-containing protein 19
3swp_B	1e-29	5	162	20	174	NAC domain-containing protein 19
3swp_C	1e-29	5	162	20	174	NAC domain-containing protein 19
3swp_D	1e-29	5	162	20	174	NAC domain-containing protein 19
4dul_A	2e-29	5	162	17	171	NAC domain-containing protein 19
4dul_B	2e-29	5	162	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076897.1	0.0	NAC domain-containing protein 53 isoform X1
TrEMBL	A0A2G9I3Z2	0.0	A0A2G9I3Z2_9LAMI; Uncharacterized protein
STRING	Migut.F01687.1.p	1e-179	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3141	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	8e-89	NAC domain containing protein 2