PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025420-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 300aa MW: 33075 Da PI: 9.4194

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025420-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	41.5	5e-13	3	129	38	117
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt.........................ssssaseceaesssssasnsssg............ 88 eLG+++d + ieWLlqqa+pa+ ++t+t + + SMil_00025420-RA_Salv 3 ELGHKSDDEMIEWLLQQAEPAMVAATSTipvnfaylnisvrssssslsasshfT---------------------Slgyfiqgfvaar 69 8***************************77766666554443333333333330.....................1335555555555 PP TCP 89 ..............................kaaksaa.kskksqksaasalnlakesrak 117 + +s++ ++ ++++++++ + ++k ++++ SMil_00025420-RA_Salv 70 civlsrssasrrrraegdltrnyipqsssgSIPTSDQlEEGSQNARETECQRIQKGQSNQ 129 555433333333222222233333222222222222213333333333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	10.974	1	27	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.5E-13	3	133	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MPELGHKSDD EMIEWLLQQA EPAMVAATST IPVNFAYLNI SVRSSSSSLS ASSHFTSLGY 60 FIQGFVAARC IVLSRSSASR RRRAEGDLTR NYIPQSSSGS IPTSDQLEEG SQNARETECQ 120 RIQKGQSNQS RQRIQKARGI EPSEDSKCQG CGVGFAREIK LPEDSQRARA EVIPLTASGE 180 AIPLTASGEA IPLTASTEKS TSPEKSSEQR NPPSSEIIRA EEFSEVLQGS KALSPLVKEY 240 RTRAGKQEKE GRQEKMKAQQ TSEEGLQVGV RKRRKAAAIQ KRPIRPNHNL IQKEAYLRED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-12	TCP family protein