PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00025195-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 82aa MW: 9645.31 Da PI: 10.9475

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00025195-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.2	1.2e-24	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ s rqvtfskRr g+lKKA ELSvLCd ++ vi++s +gk y y+s SMil_00025195-RA_Salv 9 KRIEDISSRQVTFSKRRSGLLKKARELSVLCDLDIGVIVYSCRGKHYWYCS 59 79********************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.4E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.852	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-26	2	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-23	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MGRRKLQIKR IEDISSRQVT FSKRRSGLLK KARELSVLCD LDIGVIVYSC RGKHYWYCST 60 NRELIALSLR RDKHLIAGTH WN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	8e-19	1	82	1	73	MEF2C
5f28_B	8e-19	1	82	1	73	MEF2C
5f28_C	8e-19	1	82	1	73	MEF2C
5f28_D	8e-19	1	82	1	73	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086821.1	4e-28	MADS-box transcription factor 7-like isoform X1
Refseq	XP_011086822.1	4e-28	MADS-box transcription factor 7-like isoform X2
Refseq	XP_011086823.1	4e-28	MADS-box transcription factor 7-like isoform X3
Refseq	XP_020551812.1	4e-28	MADS-box transcription factor 7-like isoform X4
Refseq	XP_022881723.1	2e-28	MADS-box transcription factor 7-like
Swissprot	Q40702	6e-23	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A4D8YAX9	1e-29	A0A4D8YAX9_SALSN; MADS-box transcription factor, plant
STRING	Solyc05g015730.1.1	2e-24	(Solanum lycopersicum)
STRING	XP_009795052.1	6e-24	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	4e-23	AGAMOUS-like 44

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]