PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00023985-RA_Salv | ||||||||
Common Name | WRKY23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 37956.9 Da PI: 10.0422 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100 | 1.5e-31 | 275 | 332 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ed +++++tYegeHnh+ SMil_00023985-RA_Salv 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDSSMLIVTYEGEHNHP 332 9************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.6E-15 | 226 | 271 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-34 | 261 | 333 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.136 | 268 | 334 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-27 | 271 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-39 | 273 | 333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 275 | 332 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEEVERANSA AVESCYRVIH LLSQPQIQNH YRNLSDQTGD AVNKFKKVVS LLNSSSGHAR 60 VRKFKKIQPP LPQNIFLENP MTRTEDQHPK PLSLIQINPL ESNPLQEHGS TIKSALTLAS 120 PSLELNSLAK NLPQFAQQAA DYHLLQQQKQ RRIQLQQQQQ AEVMYRCNSS GISLNFDGST 180 CTPAMSSSRS FISSLSVDAS VANMDGSAFH LIGSSRSADQ GSYHHKRRCS GRGDDGSVKC 240 GGSGRCRCSK KRKNKIKRSI KVPAISTKLA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS 300 SMRGCPARKH VERCLEDSSM LIVTYEGEHN HPNLPSQSAN T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 269 | 335 | 10 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823146 | 0.0 | KM823146.1 Salvia miltiorrhiza WRKY protein (WRKY23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080000.1 | 1e-180 | probable WRKY transcription factor 21 isoform X1 | ||||
Swissprot | O04336 | 1e-111 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A0D5Y995 | 0.0 | A0A0D5Y995_SALMI; WRKY protein | ||||
STRING | XP_009618397.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3271 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-75 | WRKY DNA-binding protein 39 |