PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023736-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 797aa    MW: 88424.3 Da    PI: 5.6865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023736-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.9e-2095148356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            + +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  SMil_00023736-RA_Salv  95 RYHRHTARQIQEMESLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 148
                            66789**********************************************998 PP
2START114.31.8e-363435322173
                            HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                  START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                            la + ++el+k+ + +ep+Wv+ +      +n +e+ + f+  k      ++ea r+++vv+ ++ +lv  +ld + +W e ++    
  SMil_00023736-RA_Salv 343 LAMSSMNELLKMWQTGEPLWVRAAdtgkHVLNLEEYARMFSCLKQnphqLRTEATRDTAVVIINSITLVDAFLDAN-KWMELFPsiis 429
                            67789*******************77775555555555554433367888**************************.*********** PP

                            EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                  START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                            +a+tl+v+ s+      g ++lm+aelq+lsplvp R+  f+Ry++   ++g+w+ivd  +d   +   s+s+   +++pSg++i+++
  SMil_00023736-RA_Salv 430 RAKTLQVVHSDvpghatGSIHLMYAELQVLSPLVPtREAHFLRYCQHnAEEGTWAIVDFPIDGFHNDY-SPSFPYYKRRPSGCIIQDM 516
                            ***********************************************9**************777766.67777777*********** PP

                            CTCEEEEEEEE-EE-- CS
                  START 158 snghskvtwvehvdlk 173
                            +ng+s+vtwveh++++
  SMil_00023736-RA_Salv 517 PNGYSRVTWVEHAECE 532
                            **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-2079148IPR009057Homeodomain-like
SuperFamilySSF466892.26E-1883148IPR009057Homeodomain-like
PROSITE profilePS5007115.98590150IPR001356Homeobox domain
SMARTSM003891.6E-1691154IPR001356Homeobox domain
CDDcd000868.91E-1894148No hitNo description
PfamPF000462.1E-1795148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084833.278333559IPR002913START domain
SuperFamilySSF559618.38E-26334531No hitNo description
CDDcd088756.57E-92337532No hitNo description
SMARTSM002344.8E-18342563IPR002913START domain
PfamPF018521.4E-28343531IPR002913START domain
SuperFamilySSF559617.0E-18551776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MYGDCQVLSS STVGGNPISS DNSSLYNSSI QNPNFNFMAN ISPFNIFSPI LPKEETGMAK  60
SKEELVESGS GSEHIEGASG NEQEAEQQPP AKIKRYHRHT ARQIQEMESL FKECPHPDDK  120
QRLKLSQELG LKPRQVKFWF QNRRTQMKLA PSLRHEYIKL GLLSKPGNAI NALSGGAQST  180
PNCCMAGGNN TLMRVAQQDR QENVVLRAEN ESLKTENYRL QATLRNIVCP NCGGPAVLGE  240
MGYDEQQLRI ENARLKEEFE RVCCMMSQYN GRGMGASSDL MQQQQQPHSL ELDMGVYPPR  300
KLDEEHMSNC PSDMIPLPFM PEASHFPGNT LILEEEKSLA MELAMSSMNE LLKMWQTGEP  360
LWVRAADTGK HVLNLEEYAR MFSCLKQNPH QLRTEATRDT AVVIINSITL VDAFLDANKW  420
MELFPSIISR AKTLQVVHSD VPGHATGSIH LMYAELQVLS PLVPTREAHF LRYCQHNAEE  480
GTWAIVDFPI DGFHNDYSPS FPYYKRRPSG CIIQDMPNGY SRVTWVEHAE CERLASLMAR  540
NISDLGVIPS PEARKSVMNL AQRMIRTFCL NISTSYGQSW TALSESADDT VRITTRRVTE  600
PGQPNGLILS AVSTTWLPFQ HKHVFDFLRD ERLRAQLDVL SNGNSLNEVA HIANGSNPGN  660
CISLLRINVA SNSSQSVELV LQESCSDDSG SLVVYSTVDV DAIQMVMNGE DPSCIPVLPM  720
GFVVVPIEST KETSSESGCL LTVCLQVLAS TMPNAKLNLS SVTAINHHLC NIVQQISAVL  780
GSSNSFTDAP APKPTAD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070329.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A4D8ZET90.0A0A4D8ZET9_SALSN; Homeobox-leucine zipper protein
STRINGMigut.E00753.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7