PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023341-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 572aa MW: 65488.4 Da PI: 5.7132

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023341-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.8	1e-23	476	525	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s +++s+yF +pi++AAk+L+++lT LKr+CR++GI+RWP+Rk +sl SMil_00023341-RA_Salv 476 KKLSRQMISQYFCMPIAQAAKQLNIGLTCLKRRCRELGIPRWPYRKRRSL 525 899*******************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03469	1.3E-42	203	331	IPR005379	Uncharacterised domain XH
Pfam	PF03470	1.4E-10	381	420	IPR005381	Zinc finger-XS domain
PROSITE profile	PS51519	16.756	461	546	IPR003035	RWP-RK domain
Pfam	PF02042	9.6E-21	478	525	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031047	Biological Process	gene silencing by RNA

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MNQKSSRVDV EVGNSSTDNF DDLNDAQVTD YKQLSYKLFQ YRTYKLRGSD GEFGCPFCDD 60 YKDEHECKYT HLPLHAIRVA ESEESGKHRA NHFGMARFLA IDLGEEVKAE ADRLSWSEDG 120 KRLKRPRLDE DSTERGVDLA DKVRRLEEVL NERTEELNEM TDELNDYITR ERQSNNELHG 180 VRRELIQGLN DILKGNHVHI GIKNMGEIDP KVFISEMEKR LPPIDAEMKG VELCSLWQEK 240 IKNSQWYPYQ IIVDDNGKPK RTLKEDDTSL QGLKKQWGQE IHDAVVGALS DLYDYNPSGC 300 YVVPELWNFK ENRKAKLDEV ISYILEAVKE HGKIGRCLGN HSDGIASISD SDVYEYKGRI 360 YELLKLSIPC KVRGPSGELR CPFCSNEENR EYNYLLRHAL AVGESSSESA KQRAKHFALA 420 KYLVIDLQHN VAQSTASSPA SSSGGDQEIG EGVQSEAQLN DATINDEKFP VVNDLKKLSR 480 QMISQYFCMP IAQAAKQLNI GLTCLKRRCR ELGIPRWPYR KRRSLQIRNK DVQAKANKNV 540 QVETNSESES ECEFESDDED DLPLSRKYAR KK

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MNQKSSRVDV EVGNSSTDNF DDLNDAQVTD YKQLSYKLFQ YRTYKLRGSD GEFGCPFCDD  60
YKDEHECKYT HLPLHAIRVA ESEESGKHRA NHFGMARFLA IDLGEEVKAE ADRLSWSEDG  120
KRLKRPRLDE DSTERGVDLA DKVRRLEEVL NERTEELNEM TDELNDYITR ERQSNNELHG  180
VRRELIQGLN DILKGNHVHI GIKNMGEIDP KVFISEMEKR LPPIDAEMKG VELCSLWQEK  240
IKNSQWYPYQ IIVDDNGKPK RTLKEDDTSL QGLKKQWGQE IHDAVVGALS DLYDYNPSGC  300
YVVPELWNFK ENRKAKLDEV ISYILEAVKE HGKIGRCLGN HSDGIASISD SDVYEYKGRI  360
YELLKLSIPC KVRGPSGELR CPFCSNEENR EYNYLLRHAL AVGESSSESA KQRAKHFALA  420
KYLVIDLQHN VAQSTASSPA SSSGGDQEIG EGVQSEAQLN DATINDEKFP VVNDLKKLSR  480
QMISQYFCMP IAQAAKQLNI GLTCLKRRCR ELGIPRWPYR KRRSLQIRNK DVQAKANKNV  540
QVETNSESES ECEFESDDED DLPLSRKYAR KK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	505	522	KRRCRELGIPRWPYRKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-18	RWP-RK domain-containing protein